miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31781 5' -52.9 NC_006938.1 + 63396 0.67 0.847934
Target:  5'- gGUgCAuACGUGGACGGCGAgGuccgcuGGGACu -3'
miRNA:   3'- aCA-GU-UGCACUUGCCGCUgC------CUCUGu -5'
31781 5' -52.9 NC_006938.1 + 62724 0.67 0.821244
Target:  5'- -aUCuuCGUGGACGGCaacuUGGAGGCc -3'
miRNA:   3'- acAGuuGCACUUGCCGcu--GCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 61877 0.72 0.554057
Target:  5'- aGUCAGCGgGAccgACGGCGAguuccuccuucucuUGGAGACc -3'
miRNA:   3'- aCAGUUGCaCU---UGCCGCU--------------GCCUCUGu -5'
31781 5' -52.9 NC_006938.1 + 61417 0.67 0.839252
Target:  5'- aUGUCGGCGUGGcacCGGCccucgacACGGAG-CAu -3'
miRNA:   3'- -ACAGUUGCACUu--GCCGc------UGCCUCuGU- -5'
31781 5' -52.9 NC_006938.1 + 59510 0.67 0.821244
Target:  5'- aGUCGGcCGgguccGGCGGCGccacucgaaACGGAGGCAa -3'
miRNA:   3'- aCAGUU-GCac---UUGCCGC---------UGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 59317 0.68 0.752503
Target:  5'- cGUCGGCGaGGAC-GCGAUGGAGuucGCGg -3'
miRNA:   3'- aCAGUUGCaCUUGcCGCUGCCUC---UGU- -5'
31781 5' -52.9 NC_006938.1 + 57878 0.69 0.73159
Target:  5'- cGUCGACGaGAAC-GUGACGGAG-Cu -3'
miRNA:   3'- aCAGUUGCaCUUGcCGCUGCCUCuGu -5'
31781 5' -52.9 NC_006938.1 + 49713 0.66 0.887793
Target:  5'- gGUCuucucgGUGAucuCGGCGAaccuUGGAGGCAu -3'
miRNA:   3'- aCAGuug---CACUu--GCCGCU----GCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 49380 0.68 0.782924
Target:  5'- -aUCGACGauGACGGCGAgcCGGuGGCAu -3'
miRNA:   3'- acAGUUGCacUUGCCGCU--GCCuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 48324 0.68 0.75663
Target:  5'- aG-CAGCGUGAcgGCcugaaccccggcucgGGCGGCGGuGACGa -3'
miRNA:   3'- aCaGUUGCACU--UG---------------CCGCUGCCuCUGU- -5'
31781 5' -52.9 NC_006938.1 + 48096 0.75 0.405578
Target:  5'- uUGUCgAGCGUGAugccggagGCGGCGAgGGAguuGACAc -3'
miRNA:   3'- -ACAG-UUGCACU--------UGCCGCUgCCU---CUGU- -5'
31781 5' -52.9 NC_006938.1 + 45915 0.72 0.568116
Target:  5'- gGUCcugauCG-GAGCcucGGCGGCGGAGACGg -3'
miRNA:   3'- aCAGuu---GCaCUUG---CCGCUGCCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 42541 0.66 0.864611
Target:  5'- cGUCAACGgcaagGGuucCGGcCGAgGGAGugGc -3'
miRNA:   3'- aCAGUUGCa----CUu--GCC-GCUgCCUCugU- -5'
31781 5' -52.9 NC_006938.1 + 41592 0.69 0.710279
Target:  5'- cGUCAGCaggGAGCGGCugcgcGGCGGccuGGGCAa -3'
miRNA:   3'- aCAGUUGca-CUUGCCG-----CUGCC---UCUGU- -5'
31781 5' -52.9 NC_006938.1 + 40075 0.7 0.644858
Target:  5'- gGUCcaucgccaGACGUGaagccGugGGCGACGGAGGu- -3'
miRNA:   3'- aCAG--------UUGCAC-----UugCCGCUGCCUCUgu -5'
31781 5' -52.9 NC_006938.1 + 39681 0.74 0.46338
Target:  5'- gGUCAGCGUGccaguGGCGGCGACGucguccGAGAa- -3'
miRNA:   3'- aCAGUUGCAC-----UUGCCGCUGC------CUCUgu -5'
31781 5' -52.9 NC_006938.1 + 39325 0.66 0.887793
Target:  5'- uUGcCGGCGa-GGCGGCGACGuAGGCGu -3'
miRNA:   3'- -ACaGUUGCacUUGCCGCUGCcUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 38808 0.66 0.86217
Target:  5'- cGUCcuuCGUGGACGGUGugaccaacuucucuGCaGAGGCAu -3'
miRNA:   3'- aCAGuu-GCACUUGCCGC--------------UGcCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 38802 0.67 0.847934
Target:  5'- gGUC-GCGaUGAA-GGCGGCcuGGAGACGc -3'
miRNA:   3'- aCAGuUGC-ACUUgCCGCUG--CCUCUGU- -5'
31781 5' -52.9 NC_006938.1 + 30084 0.71 0.611846
Target:  5'- cGUCGGCGgcaUGGGuCGGUucGGCGGAGGCu -3'
miRNA:   3'- aCAGUUGC---ACUU-GCCG--CUGCCUCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.