miRNA display CGI


Results 1 - 20 of 60 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31783 5' -58.7 NC_006938.1 + 63092 0.66 0.575503
Target:  5'- cGUGgGCUGucGCCGCUggaauaCGGCaGUGGGGCa -3'
miRNA:   3'- -CAUgCGGU--UGGUGGa-----GCCG-CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 61407 0.72 0.274196
Target:  5'- -aACGCaGACCAUgUCGGCGUGGcaccGGCc -3'
miRNA:   3'- caUGCGgUUGGUGgAGCCGCGCC----UCG- -5'
31783 5' -58.7 NC_006938.1 + 60614 0.75 0.177981
Target:  5'- -aACGCCAACUucGCCaUCGGgGCGGcgAGCu -3'
miRNA:   3'- caUGCGGUUGG--UGG-AGCCgCGCC--UCG- -5'
31783 5' -58.7 NC_006938.1 + 57510 0.66 0.544168
Target:  5'- aGUuCGCCAACCgauACCUgCcaUGCGGAGCc -3'
miRNA:   3'- -CAuGCGGUUGG---UGGA-GccGCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 55275 0.67 0.503313
Target:  5'- -cACGCCcacGCCACC-CGGCGCaaGGUc -3'
miRNA:   3'- caUGCGGu--UGGUGGaGCCGCGccUCG- -5'
31783 5' -58.7 NC_006938.1 + 55200 0.66 0.596622
Target:  5'- -gACGCaggaaggauCCAUCaggUCGGCGCGGAuacGCg -3'
miRNA:   3'- caUGCGguu------GGUGG---AGCCGCGCCU---CG- -5'
31783 5' -58.7 NC_006938.1 + 54397 0.67 0.513409
Target:  5'- -cACGCC-ACCugUcgCGGC-CGGAGUc -3'
miRNA:   3'- caUGCGGuUGGugGa-GCCGcGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 52146 0.68 0.467722
Target:  5'- -gGCaGCCAACCAgcuccugcagcagcuCCUCGGUGgaGGAGg -3'
miRNA:   3'- caUG-CGGUUGGU---------------GGAGCCGCg-CCUCg -5'
31783 5' -58.7 NC_006938.1 + 51231 0.68 0.444729
Target:  5'- uUGCGaCGGCCAUCUCGGCGCu---- -3'
miRNA:   3'- cAUGCgGUUGGUGGAGCCGCGccucg -5'
31783 5' -58.7 NC_006938.1 + 50998 0.66 0.544168
Target:  5'- -cAgGCCcucGGCCGCCUCgcggaaGGCGuuGAGCa -3'
miRNA:   3'- caUgCGG---UUGGUGGAG------CCGCgcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 50291 0.67 0.503313
Target:  5'- ---aGCCAGCCgguGCCU-GG-GCGGAGUa -3'
miRNA:   3'- caugCGGUUGG---UGGAgCCgCGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 50044 0.66 0.596622
Target:  5'- -aACGCgagaGGCCuuuguGCC-CGGCGCGGguGGCu -3'
miRNA:   3'- caUGCGg---UUGG-----UGGaGCCGCGCC--UCG- -5'
31783 5' -58.7 NC_006938.1 + 48488 0.72 0.261003
Target:  5'- uGUAgGCCGugGCCGCCUCGauCGUGGAGa -3'
miRNA:   3'- -CAUgCGGU--UGGUGGAGCc-GCGCCUCg -5'
31783 5' -58.7 NC_006938.1 + 48022 0.69 0.398953
Target:  5'- -cACGCuCGACaagACCUcgggCGGCGCGGAcgGCa -3'
miRNA:   3'- caUGCG-GUUGg--UGGA----GCCGCGCCU--CG- -5'
31783 5' -58.7 NC_006938.1 + 47720 0.79 0.08825
Target:  5'- gGUACGCUGcACCACCUcCGGUGCcGAGCg -3'
miRNA:   3'- -CAUGCGGU-UGGUGGA-GCCGCGcCUCG- -5'
31783 5' -58.7 NC_006938.1 + 47058 0.68 0.463847
Target:  5'- -gACGCgCGcCCACUcgUCGGCggucgGCGGAGUg -3'
miRNA:   3'- caUGCG-GUuGGUGG--AGCCG-----CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 46966 0.66 0.575503
Target:  5'- --cCGCCGACCGCCgacgagugGGCGCGcGucaccguGCg -3'
miRNA:   3'- cauGCGGUUGGUGGag------CCGCGC-Cu------CG- -5'
31783 5' -58.7 NC_006938.1 + 44132 0.66 0.579715
Target:  5'- -cGCGCCAgucccgguuGCCACCUCcauucccgccgaGGcCagaccgaugaacaucGCGGAGCg -3'
miRNA:   3'- caUGCGGU---------UGGUGGAG------------CC-G---------------CGCCUCG- -5'
31783 5' -58.7 NC_006938.1 + 42438 0.7 0.34817
Target:  5'- -gACGCCuGCCAcucCCUCGGC-CGGAa- -3'
miRNA:   3'- caUGCGGuUGGU---GGAGCCGcGCCUcg -5'
31783 5' -58.7 NC_006938.1 + 42406 0.66 0.565005
Target:  5'- -gGCGUCGAguucuUCGCCgacgCGGC-CGGAGCn -3'
miRNA:   3'- caUGCGGUU-----GGUGGa---GCCGcGCCUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.