miRNA display CGI


Results 41 - 60 of 112 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31784 5' -54 NC_006938.1 + 52557 0.66 0.83396
Target:  5'- aUGGCgUUCGACGA----GACAAGGCu -3'
miRNA:   3'- gGCUGgAGGCUGCUguucCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 20681 0.67 0.825108
Target:  5'- gCCG-CCgCCGugGugagaacCAGGGACA-GGCc -3'
miRNA:   3'- -GGCuGGaGGCugCu------GUUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 11564 0.66 0.83396
Target:  5'- gUCGugUucgUCgGGCGGCAGGuGGCgGAGGCc -3'
miRNA:   3'- -GGCugG---AGgCUGCUGUUC-CUG-UUCCG- -5'
31784 5' -54 NC_006938.1 + 33381 0.67 0.816061
Target:  5'- gCCGGuCC-CaacaggGACGACAAGGGCAccauccuuGGCa -3'
miRNA:   3'- -GGCU-GGaGg-----CUGCUGUUCCUGUu-------CCG- -5'
31784 5' -54 NC_006938.1 + 40469 0.67 0.816061
Target:  5'- aCGAcacuCCUCCGACGgACGAc--CAGGGCc -3'
miRNA:   3'- gGCU----GGAGGCUGC-UGUUccuGUUCCG- -5'
31784 5' -54 NC_006938.1 + 21694 0.66 0.83396
Target:  5'- cCCGGCuCUCUgagauaGACGACcuGGACcagcacgggGAGGUg -3'
miRNA:   3'- -GGCUG-GAGG------CUGCUGuuCCUG---------UUCCG- -5'
31784 5' -54 NC_006938.1 + 2733 0.69 0.674564
Target:  5'- aCGACCacUCCGcCGcCAuccuGGACGGGGUc -3'
miRNA:   3'- gGCUGG--AGGCuGCuGUu---CCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 10388 0.75 0.372083
Target:  5'- uCCGAUga-CGACGACcagucgaacaucGAGGGCGAGGCg -3'
miRNA:   3'- -GGCUGgagGCUGCUG------------UUCCUGUUCCG- -5'
31784 5' -54 NC_006938.1 + 19926 0.74 0.407452
Target:  5'- aCGGCUUCCccgucGGCGugGAGGACuccaggGAGGCc -3'
miRNA:   3'- gGCUGGAGG-----CUGCugUUCCUG------UUCCG- -5'
31784 5' -54 NC_006938.1 + 57957 0.73 0.444852
Target:  5'- uCUGGCUUCCagGACGGguGGGACGGcGGCu -3'
miRNA:   3'- -GGCUGGAGG--CUGCUguUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 53367 0.73 0.4545
Target:  5'- aCCGGCCucUCCGuuGACAAccuGGACGuccuGGGCu -3'
miRNA:   3'- -GGCUGG--AGGCugCUGUU---CCUGU----UCCG- -5'
31784 5' -54 NC_006938.1 + 31036 0.72 0.494172
Target:  5'- uCUGGCCg-CGugGAgAAGGGCGAcGGCu -3'
miRNA:   3'- -GGCUGGagGCugCUgUUCCUGUU-CCG- -5'
31784 5' -54 NC_006938.1 + 33018 0.71 0.556392
Target:  5'- uCUGACUUCCagGACaGCGAGGGCA-GGUg -3'
miRNA:   3'- -GGCUGGAGG--CUGcUGUUCCUGUuCCG- -5'
31784 5' -54 NC_006938.1 + 48344 0.69 0.685267
Target:  5'- cCCGGC-UCgGGCGGCGGuGACGAGcGCg -3'
miRNA:   3'- -GGCUGgAGgCUGCUGUUcCUGUUC-CG- -5'
31784 5' -54 NC_006938.1 + 46968 0.69 0.695921
Target:  5'- gCCGACCgCCGACGAgu-GGGCGc-GCg -3'
miRNA:   3'- -GGCUGGaGGCUGCUguuCCUGUucCG- -5'
31784 5' -54 NC_006938.1 + 50130 0.69 0.706515
Target:  5'- uUCGcACCUUCGAUGGaGAGGGCGAGa- -3'
miRNA:   3'- -GGC-UGGAGGCUGCUgUUCCUGUUCcg -5'
31784 5' -54 NC_006938.1 + 25761 0.69 0.706515
Target:  5'- aUGugCUCCGugGugGucuGGGccaccuccccgaGCGAGGCc -3'
miRNA:   3'- gGCugGAGGCugCugU---UCC------------UGUUCCG- -5'
31784 5' -54 NC_006938.1 + 22421 0.69 0.715991
Target:  5'- aCGGCC-CUGgucaugcGCGGCAAGGA--GGGCa -3'
miRNA:   3'- gGCUGGaGGC-------UGCUGUUCCUguUCCG- -5'
31784 5' -54 NC_006938.1 + 23042 0.69 0.71704
Target:  5'- uCUGGCaCUCCuACGuCAAGGACAugcAGGa -3'
miRNA:   3'- -GGCUG-GAGGcUGCuGUUCCUGU---UCCg -5'
31784 5' -54 NC_006938.1 + 11493 0.68 0.737835
Target:  5'- gUGACUucuuUCCGAUucGCGAGGcgcGCAAGGCg -3'
miRNA:   3'- gGCUGG----AGGCUGc-UGUUCC---UGUUCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.