Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 5' | -56.3 | NC_006938.1 | + | 17010 | 0.68 | 0.558302 |
Target: 5'- cGCaAGC--UGCuCGAGGCggaGUCCUCGAu -3' miRNA: 3'- cCG-UCGuuACG-GUUCCGg--CAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 54409 | 0.68 | 0.558302 |
Target: 5'- cGCGGCcggaGUCGAGGCCaccacuGUCCUCGc -3' miRNA: 3'- cCGUCGuua-CGGUUCCGG------CAGGAGCu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 6201 | 0.67 | 0.644824 |
Target: 5'- cGGCAuagucgccccauGCcucgGCCAGGGCCGUCuCUUc- -3' miRNA: 3'- -CCGU------------CGuua-CGGUUCCGGCAG-GAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 51497 | 0.67 | 0.633951 |
Target: 5'- uGGCAGCGGcgGCgAuGGCCGgccacacgCuCUCGAa -3' miRNA: 3'- -CCGUCGUUa-CGgUuCCGGCa-------G-GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 17911 | 0.67 | 0.632864 |
Target: 5'- ---cGC-AUGCCAuaggcgcGGGCCG-CCUCGAu -3' miRNA: 3'- ccguCGuUACGGU-------UCCGGCaGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 25890 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCcguugGCCAcgaucguucGGGCC-UCgCUCGGg -3' miRNA: 3'- -CCGUCGuua--CGGU---------UCCGGcAG-GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 5589 | 0.68 | 0.590536 |
Target: 5'- aGCGGCGGgugGCgCGuccuGGUgGUCCUCGGc -3' miRNA: 3'- cCGUCGUUa--CG-GUu---CCGgCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 48494 | 0.68 | 0.590536 |
Target: 5'- aGGUguuGUAG-GCCGuGGCCG-CCUCGAu -3' miRNA: 3'- -CCGu--CGUUaCGGUuCCGGCaGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 61013 | 0.68 | 0.568999 |
Target: 5'- aGGaacucuGgAGUGCUGAGGUccgCGUCCUCGAa -3' miRNA: 3'- -CCgu----CgUUACGGUUCCG---GCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 37619 | 0.68 | 0.566855 |
Target: 5'- uGGCGGCcucguccagcuUGCCAGcGGCgGcggCCUCGAg -3' miRNA: 3'- -CCGUCGuu---------ACGGUU-CCGgCa--GGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 40571 | 0.66 | 0.655685 |
Target: 5'- gGGUucGGCug-GCCcuGGUCGUCCgUCGGa -3' miRNA: 3'- -CCG--UCGuuaCGGuuCCGGCAGG-AGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 6991 | 0.66 | 0.655685 |
Target: 5'- cGGCuggggaGGCAagGCCGGGGCCG-CUcUGAu -3' miRNA: 3'- -CCG------UCGUuaCGGUUCCGGCaGGaGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 63611 | 0.78 | 0.140604 |
Target: 5'- gGGCAGC--UGCCAGugcGGuCCGUCCUUGAa -3' miRNA: 3'- -CCGUCGuuACGGUU---CC-GGCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 44954 | 0.66 | 0.688101 |
Target: 5'- cGGgAGCcGUGCCAAGGUggacuguuccacUGUCUgCGAu -3' miRNA: 3'- -CCgUCGuUACGGUUCCG------------GCAGGaGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 52027 | 0.66 | 0.677334 |
Target: 5'- gGGCGGCAccGCCGAGcccaccGCCG-CCU-GAc -3' miRNA: 3'- -CCGUCGUuaCGGUUC------CGGCaGGAgCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 45966 | 0.66 | 0.677334 |
Target: 5'- cGuCAGCGAggaCAGGGCCGUCCg--- -3' miRNA: 3'- cC-GUCGUUacgGUUCCGGCAGGagcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 22505 | 0.66 | 0.677334 |
Target: 5'- uGCcGCGcAUGaCCAGGGCCGU-CUCGc -3' miRNA: 3'- cCGuCGU-UAC-GGUUCCGGCAgGAGCu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 51266 | 0.66 | 0.666526 |
Target: 5'- uGGCGGCGAUGgCA--GCCGUCagcgcgCGGa -3' miRNA: 3'- -CCGUCGUUACgGUucCGGCAGga----GCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 13981 | 0.66 | 0.666526 |
Target: 5'- uGGCgcuGGCgAAUGUagaacuCGAGGUCGUCgUCGAg -3' miRNA: 3'- -CCG---UCG-UUACG------GUUCCGGCAGgAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 4278 | 0.66 | 0.655685 |
Target: 5'- cGGCGGUcagcagggucucGAUGUCGGaGCCGUCCgccCGGa -3' miRNA: 3'- -CCGUCG------------UUACGGUUcCGGCAGGa--GCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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