Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 5' | -56.3 | NC_006938.1 | + | 37918 | 0.68 | 0.579747 |
Target: 5'- gGGCGGCGAgcgggcggugGCCAGGGCgGUggaggCgUCGGc -3' miRNA: 3'- -CCGUCGUUa---------CGGUUCCGgCA-----GgAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 5589 | 0.68 | 0.590536 |
Target: 5'- aGCGGCGGgugGCgCGuccuGGUgGUCCUCGGc -3' miRNA: 3'- cCGUCGUUa--CG-GUu---CCGgCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 48494 | 0.68 | 0.590536 |
Target: 5'- aGGUguuGUAG-GCCGuGGCCG-CCUCGAu -3' miRNA: 3'- -CCGu--CGUUaCGGUuCCGGCaGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 14619 | 0.68 | 0.590536 |
Target: 5'- uGGCuGGC--UGCCGAcGGUCGggaaCCUCGAg -3' miRNA: 3'- -CCG-UCGuuACGGUU-CCGGCa---GGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 7576 | 0.67 | 0.601361 |
Target: 5'- uGGCcaAGCAccugGCCGAGGgCGU-CUCGGg -3' miRNA: 3'- -CCG--UCGUua--CGGUUCCgGCAgGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 1337 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCAagGCC---GCCGUCgccagagagCUCGGg -3' miRNA: 3'- -CCGUCGUuaCGGuucCGGCAG---------GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 25890 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCcguugGCCAcgaucguucGGGCC-UCgCUCGGg -3' miRNA: 3'- -CCGUCGuua--CGGU---------UCCGGcAG-GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 17911 | 0.67 | 0.632864 |
Target: 5'- ---cGC-AUGCCAuaggcgcGGGCCG-CCUCGAu -3' miRNA: 3'- ccguCGuUACGGU-------UCCGGCaGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 51497 | 0.67 | 0.633951 |
Target: 5'- uGGCAGCGGcgGCgAuGGCCGgccacacgCuCUCGAa -3' miRNA: 3'- -CCGUCGUUa-CGgUuCCGGCa-------G-GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 10671 | 0.67 | 0.633951 |
Target: 5'- aGGaCGGCAAggugGUCGAGGgCGcaaUCCUCGc -3' miRNA: 3'- -CC-GUCGUUa---CGGUUCCgGC---AGGAGCu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 6201 | 0.67 | 0.644824 |
Target: 5'- cGGCAuagucgccccauGCcucgGCCAGGGCCGUCuCUUc- -3' miRNA: 3'- -CCGU------------CGuua-CGGUUCCGGCAG-GAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 39543 | 0.66 | 0.6546 |
Target: 5'- cGGUGGCAcgGCCAccGcucgcacggucucGGCCGUCgacuuCUCGGa -3' miRNA: 3'- -CCGUCGUuaCGGU--U-------------CCGGCAG-----GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 6991 | 0.66 | 0.655685 |
Target: 5'- cGGCuggggaGGCAagGCCGGGGCCG-CUcUGAu -3' miRNA: 3'- -CCG------UCGUuaCGGUUCCGGCaGGaGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 40571 | 0.66 | 0.655685 |
Target: 5'- gGGUucGGCug-GCCcuGGUCGUCCgUCGGa -3' miRNA: 3'- -CCG--UCGuuaCGGuuCCGGCAGG-AGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 4278 | 0.66 | 0.655685 |
Target: 5'- cGGCGGUcagcagggucucGAUGUCGGaGCCGUCCgccCGGa -3' miRNA: 3'- -CCGUCG------------UUACGGUUcCGGCAGGa--GCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 13981 | 0.66 | 0.666526 |
Target: 5'- uGGCgcuGGCgAAUGUagaacuCGAGGUCGUCgUCGAg -3' miRNA: 3'- -CCG---UCG-UUACG------GUUCCGGCAGgAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 48352 | 0.66 | 0.666526 |
Target: 5'- gGGCGGCGGUGaCGAGcGC-GUCCugUCGGa -3' miRNA: 3'- -CCGUCGUUACgGUUC-CGgCAGG--AGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 47010 | 0.66 | 0.666526 |
Target: 5'- gGGUGGCAAcgacgcUGCCcugggcGGCCGaaUCUUCGAg -3' miRNA: 3'- -CCGUCGUU------ACGGuu----CCGGC--AGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 51266 | 0.66 | 0.666526 |
Target: 5'- uGGCGGCGAUGgCA--GCCGUCagcgcgCGGa -3' miRNA: 3'- -CCGUCGUUACgGUucCGGCAGga----GCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 22505 | 0.66 | 0.677334 |
Target: 5'- uGCcGCGcAUGaCCAGGGCCGU-CUCGc -3' miRNA: 3'- cCGuCGU-UAC-GGUUCCGGCAgGAGCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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