miRNA display CGI


Results 21 - 40 of 48 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31790 5' -56.3 NC_006938.1 + 22505 0.66 0.677334
Target:  5'- uGCcGCGcAUGaCCAGGGCCGU-CUCGc -3'
miRNA:   3'- cCGuCGU-UAC-GGUUCCGGCAgGAGCu -5'
31790 5' -56.3 NC_006938.1 + 24860 0.73 0.29957
Target:  5'- uGGCGGCGAUcGCCGcgcccuucuugcuGGGCCGgaagcCCUUGGg -3'
miRNA:   3'- -CCGUCGUUA-CGGU-------------UCCGGCa----GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 25890 0.67 0.623077
Target:  5'- uGGCAGCcguugGCCAcgaucguucGGGCC-UCgCUCGGg -3'
miRNA:   3'- -CCGUCGuua--CGGU---------UCCGGcAG-GAGCU- -5'
31790 5' -56.3 NC_006938.1 + 29247 0.68 0.562574
Target:  5'- cGGUGGCAuaugacucgGCCGAGGCCccucuugugcagaucGaugUCCUCGAa -3'
miRNA:   3'- -CCGUCGUua-------CGGUUCCGG---------------C---AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 31851 0.66 0.698816
Target:  5'- cGUcGCGcgGUCGAGGgUGUCCUgGAg -3'
miRNA:   3'- cCGuCGUuaCGGUUCCgGCAGGAgCU- -5'
31790 5' -56.3 NC_006938.1 + 37619 0.68 0.566855
Target:  5'- uGGCGGCcucguccagcuUGCCAGcGGCgGcggCCUCGAg -3'
miRNA:   3'- -CCGUCGuu---------ACGGUU-CCGgCa--GGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 37918 0.68 0.579747
Target:  5'- gGGCGGCGAgcgggcggugGCCAGGGCgGUggaggCgUCGGc -3'
miRNA:   3'- -CCGUCGUUa---------CGGUUCCGgCA-----GgAGCU- -5'
31790 5' -56.3 NC_006938.1 + 38603 0.69 0.472358
Target:  5'- gGGCGGCGAUGUCcgcguaggacacuccGGCCGUCagggCGAu -3'
miRNA:   3'- -CCGUCGUUACGGuu-------------CCGGCAGga--GCU- -5'
31790 5' -56.3 NC_006938.1 + 39108 0.68 0.547662
Target:  5'- aGCGGCAGUGCCAuucGGCaugccaUCgUCGAc -3'
miRNA:   3'- cCGUCGUUACGGUu--CCGgc----AGgAGCU- -5'
31790 5' -56.3 NC_006938.1 + 39543 0.66 0.6546
Target:  5'- cGGUGGCAcgGCCAccGcucgcacggucucGGCCGUCgacuuCUCGGa -3'
miRNA:   3'- -CCGUCGUuaCGGU--U-------------CCGGCAG-----GAGCU- -5'
31790 5' -56.3 NC_006938.1 + 40571 0.66 0.655685
Target:  5'- gGGUucGGCug-GCCcuGGUCGUCCgUCGGa -3'
miRNA:   3'- -CCG--UCGuuaCGGuuCCGGCAGG-AGCU- -5'
31790 5' -56.3 NC_006938.1 + 40760 0.75 0.229755
Target:  5'- cGCAGCccaaccgggaccucgAcgGUGUCAAGGCCGUCCUCc- -3'
miRNA:   3'- cCGUCG---------------U--UACGGUUCCGGCAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 41573 0.66 0.698816
Target:  5'- cGCGGCg--GCCuGGGCaaaGUCCcCGAc -3'
miRNA:   3'- cCGUCGuuaCGGuUCCGg--CAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 44954 0.66 0.688101
Target:  5'- cGGgAGCcGUGCCAAGGUggacuguuccacUGUCUgCGAu -3'
miRNA:   3'- -CCgUCGuUACGGUUCCG------------GCAGGaGCU- -5'
31790 5' -56.3 NC_006938.1 + 45793 0.66 0.677334
Target:  5'- cGGCAaCAagGCCGAGGCCcgugccacGUUCUCc- -3'
miRNA:   3'- -CCGUcGUuaCGGUUCCGG--------CAGGAGcu -5'
31790 5' -56.3 NC_006938.1 + 45966 0.66 0.677334
Target:  5'- cGuCAGCGAggaCAGGGCCGUCCg--- -3'
miRNA:   3'- cC-GUCGUUacgGUUCCGGCAGGagcu -5'
31790 5' -56.3 NC_006938.1 + 46671 0.69 0.495566
Target:  5'- cGGCAGCuggggaGCgCGGGGCCGUgucgCCUCu- -3'
miRNA:   3'- -CCGUCGuua---CG-GUUCCGGCA----GGAGcu -5'
31790 5' -56.3 NC_006938.1 + 47010 0.66 0.666526
Target:  5'- gGGUGGCAAcgacgcUGCCcugggcGGCCGaaUCUUCGAg -3'
miRNA:   3'- -CCGUCGUU------ACGGuu----CCGGC--AGGAGCU- -5'
31790 5' -56.3 NC_006938.1 + 48352 0.66 0.666526
Target:  5'- gGGCGGCGGUGaCGAGcGC-GUCCugUCGGa -3'
miRNA:   3'- -CCGUCGUUACgGUUC-CGgCAGG--AGCU- -5'
31790 5' -56.3 NC_006938.1 + 48494 0.68 0.590536
Target:  5'- aGGUguuGUAG-GCCGuGGCCG-CCUCGAu -3'
miRNA:   3'- -CCGu--CGUUaCGGUuCCGGCaGGAGCU- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.