Results 21 - 40 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31790 | 5' | -56.3 | NC_006938.1 | + | 25890 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCcguugGCCAcgaucguucGGGCC-UCgCUCGGg -3' miRNA: 3'- -CCGUCGuua--CGGU---------UCCGGcAG-GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 63611 | 0.78 | 0.140604 |
Target: 5'- gGGCAGC--UGCCAGugcGGuCCGUCCUUGAa -3' miRNA: 3'- -CCGUCGuuACGGUU---CC-GGCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 24860 | 0.73 | 0.29957 |
Target: 5'- uGGCGGCGAUcGCCGcgcccuucuugcuGGGCCGgaagcCCUUGGg -3' miRNA: 3'- -CCGUCGUUA-CGGU-------------UCCGGCa----GGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 16966 | 0.75 | 0.233344 |
Target: 5'- uGCugGGCcuUGCgGAGGUCGUCCUCGGg -3' miRNA: 3'- cCG--UCGuuACGgUUCCGGCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 46671 | 0.69 | 0.495566 |
Target: 5'- cGGCAGCuggggaGCgCGGGGCCGUgucgCCUCu- -3' miRNA: 3'- -CCGUCGuua---CG-GUUCCGGCA----GGAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 8929 | 0.69 | 0.525538 |
Target: 5'- cGCAGCuccuuguAGUGCUcuucGCCGUCCUUGAg -3' miRNA: 3'- cCGUCG-------UUACGGuuc-CGGCAGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 6499 | 0.7 | 0.442937 |
Target: 5'- -aCGGCAAUGCCGAGcgcGCUGugaucuccuucagcUCCUCGAa -3' miRNA: 3'- ccGUCGUUACGGUUC---CGGC--------------AGGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 40760 | 0.75 | 0.229755 |
Target: 5'- cGCAGCccaaccgggaccucgAcgGUGUCAAGGCCGUCCUCc- -3' miRNA: 3'- cCGUCG---------------U--UACGGUUCCGGCAGGAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 11576 | 0.7 | 0.455561 |
Target: 5'- gGGCGGCAGgugGCgGAGGCCuuuggcuUCCgUCGGg -3' miRNA: 3'- -CCGUCGUUa--CGgUUCCGGc------AGG-AGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 54115 | 0.71 | 0.399012 |
Target: 5'- cGGCAGCuuUGCCAAc-CUGUCCUCu- -3' miRNA: 3'- -CCGUCGuuACGGUUccGGCAGGAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 54409 | 0.68 | 0.558302 |
Target: 5'- cGCGGCcggaGUCGAGGCCaccacuGUCCUCGc -3' miRNA: 3'- cCGUCGuua-CGGUUCCGG------CAGGAGCu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 37918 | 0.68 | 0.579747 |
Target: 5'- gGGCGGCGAgcgggcggugGCCAGGGCgGUggaggCgUCGGc -3' miRNA: 3'- -CCGUCGUUa---------CGGUUCCGgCA-----GgAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 45793 | 0.66 | 0.677334 |
Target: 5'- cGGCAaCAagGCCGAGGCCcgugccacGUUCUCc- -3' miRNA: 3'- -CCGUcGUuaCGGUUCCGG--------CAGGAGcu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 48352 | 0.66 | 0.666526 |
Target: 5'- gGGCGGCGGUGaCGAGcGC-GUCCugUCGGa -3' miRNA: 3'- -CCGUCGUUACgGUUC-CGgCAGG--AGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 31851 | 0.66 | 0.698816 |
Target: 5'- cGUcGCGcgGUCGAGGgUGUCCUgGAg -3' miRNA: 3'- cCGuCGUuaCGGUUCCgGCAGGAgCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 10671 | 0.67 | 0.633951 |
Target: 5'- aGGaCGGCAAggugGUCGAGGgCGcaaUCCUCGc -3' miRNA: 3'- -CC-GUCGUUa---CGGUUCCgGC---AGGAGCu -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 22027 | 0.66 | 0.688101 |
Target: 5'- cGGCGGCAAgaUCAAGGUCGgCUaCGAg -3' miRNA: 3'- -CCGUCGUUacGGUUCCGGCaGGaGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 1337 | 0.67 | 0.623077 |
Target: 5'- uGGCAGCAagGCC---GCCGUCgccagagagCUCGGg -3' miRNA: 3'- -CCGUCGUuaCGGuucCGGCAG---------GAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 7576 | 0.67 | 0.601361 |
Target: 5'- uGGCcaAGCAccugGCCGAGGgCGU-CUCGGg -3' miRNA: 3'- -CCG--UCGUua--CGGUUCCgGCAgGAGCU- -5' |
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31790 | 5' | -56.3 | NC_006938.1 | + | 14619 | 0.68 | 0.590536 |
Target: 5'- uGGCuGGC--UGCCGAcGGUCGggaaCCUCGAg -3' miRNA: 3'- -CCG-UCGuuACGGUU-CCGGCa---GGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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