Results 41 - 48 of 48 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 31790 | 5' | -56.3 | NC_006938.1 | + | 54115 | 0.71 | 0.399012 |
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Target: 5'- cGGCAGCuuUGCCAAc-CUGUCCUCu- -3' miRNA: 3'- -CCGUCGuuACGGUUccGGCAGGAGcu -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 24860 | 0.73 | 0.29957 |
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Target: 5'- uGGCGGCGAUcGCCGcgcccuucuugcuGGGCCGgaagcCCUUGGg -3' miRNA: 3'- -CCGUCGUUA-CGGU-------------UCCGGCa----GGAGCU- -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 17287 | 0.74 | 0.258494 |
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Target: 5'- cGCGGCcauUGCCAAGGCCaUCCaCGAc -3' miRNA: 3'- cCGUCGuu-ACGGUUCCGGcAGGaGCU- -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 16966 | 0.75 | 0.233344 |
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Target: 5'- uGCugGGCcuUGCgGAGGUCGUCCUCGGg -3' miRNA: 3'- cCG--UCGuuACGgUUCCGGCAGGAGCU- -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 40760 | 0.75 | 0.229755 |
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Target: 5'- cGCAGCccaaccgggaccucgAcgGUGUCAAGGCCGUCCUCc- -3' miRNA: 3'- cCGUCG---------------U--UACGGUUCCGGCAGGAGcu -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 63611 | 0.78 | 0.140604 |
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Target: 5'- gGGCAGC--UGCCAGugcGGuCCGUCCUUGAa -3' miRNA: 3'- -CCGUCGuuACGGUU---CC-GGCAGGAGCU- -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 6791 | 0.8 | 0.100821 |
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Target: 5'- uGGCGGCGAgGCCAAGGCCGaCCUg-- -3' miRNA: 3'- -CCGUCGUUaCGGUUCCGGCaGGAgcu -5' |
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| 31790 | 5' | -56.3 | NC_006938.1 | + | 5526 | 1.11 | 0.000658 |
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Target: 5'- uGGCAGCAAUGCCAAGGCCGUCCUCGAg -3' miRNA: 3'- -CCGUCGUUACGGUUCCGGCAGGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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