miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31796 3' -60.3 NC_006938.1 + 31039 0.66 0.523071
Target:  5'- gGCCGCGUGgAgaagGGCGAcggcuaugucccGGCGGaCCUu -3'
miRNA:   3'- gCGGCGCAUgUga--CCGUU------------CCGCC-GGG- -5'
31796 3' -60.3 NC_006938.1 + 37919 0.66 0.513008
Target:  5'- gGCgGCGagcggGCGgUGGcCAGGGCGGUg- -3'
miRNA:   3'- gCGgCGCa----UGUgACC-GUUCCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 32911 0.66 0.513008
Target:  5'- aGCCacGCGgcCAgcUUGGCGGGGUugucGGCCUg -3'
miRNA:   3'- gCGG--CGCauGU--GACCGUUCCG----CCGGG- -5'
31796 3' -60.3 NC_006938.1 + 13075 0.66 0.513008
Target:  5'- aCGaCCGCGUcaaGCAg-GGCGAGGgaaaGCCCa -3'
miRNA:   3'- -GC-GGCGCA---UGUgaCCGUUCCgc--CGGG- -5'
31796 3' -60.3 NC_006938.1 + 3770 0.66 0.513008
Target:  5'- uCGUCGgGcGCGgUGGCAAGGgUGGCa- -3'
miRNA:   3'- -GCGGCgCaUGUgACCGUUCC-GCCGgg -5'
31796 3' -60.3 NC_006938.1 + 35611 0.66 0.513008
Target:  5'- gGCCGUcaggGCACUGcGCucGGaGGCCUg -3'
miRNA:   3'- gCGGCGca--UGUGAC-CGuuCCgCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 30648 0.66 0.513008
Target:  5'- aGCCGuCG-ACcCUGGCucAGGUGGCa- -3'
miRNA:   3'- gCGGC-GCaUGuGACCGu-UCCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 51899 0.66 0.510004
Target:  5'- uCGCCGCcagugGCGCUGcaGCAgacgcucuggggucAGGCGGCg- -3'
miRNA:   3'- -GCGGCGca---UGUGAC--CGU--------------UCCGCCGgg -5'
31796 3' -60.3 NC_006938.1 + 18562 0.66 0.504019
Target:  5'- aGCCGaggaugcuCGUGCACUucgccgagauaugcGGCAugcccggcgcguccgAGGCGGCgCa -3'
miRNA:   3'- gCGGC--------GCAUGUGA--------------CCGU---------------UCCGCCGgG- -5'
31796 3' -60.3 NC_006938.1 + 8908 0.66 0.503025
Target:  5'- uCGCCGUccuugaggGCGUUGGCGAcaCGGCCCa -3'
miRNA:   3'- -GCGGCGca------UGUGACCGUUccGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 36393 0.66 0.493128
Target:  5'- -cUUGUGgcCACgUGGCAGGuCGGCCCg -3'
miRNA:   3'- gcGGCGCauGUG-ACCGUUCcGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 44231 0.66 0.493128
Target:  5'- uGCUGCcuuCACUGGCAGuGUgagccaGGCCCu -3'
miRNA:   3'- gCGGCGcauGUGACCGUUcCG------CCGGG- -5'
31796 3' -60.3 NC_006938.1 + 58032 0.66 0.492143
Target:  5'- aGCCGCGcccuCGCcGGCAcagacugGGGCGugacgaucaacGCCCu -3'
miRNA:   3'- gCGGCGCau--GUGaCCGU-------UCCGC-----------CGGG- -5'
31796 3' -60.3 NC_006938.1 + 41679 0.66 0.483321
Target:  5'- uGCCGaCGUugAUccggGGC-AGGuuGCCCa -3'
miRNA:   3'- gCGGC-GCAugUGa---CCGuUCCgcCGGG- -5'
31796 3' -60.3 NC_006938.1 + 1633 0.66 0.482345
Target:  5'- cCGCCaaGUcggugaaGC-CUGGCAAGG-GGCCg -3'
miRNA:   3'- -GCGGcgCA-------UGuGACCGUUCCgCCGGg -5'
31796 3' -60.3 NC_006938.1 + 10653 0.66 0.473609
Target:  5'- cCGCCGaGUAUgugACggaggacGGCAAGGUGGUCg -3'
miRNA:   3'- -GCGGCgCAUG---UGa------CCGUUCCGCCGGg -5'
31796 3' -60.3 NC_006938.1 + 43335 0.66 0.473609
Target:  5'- aGCCGUucuccAUACUcGGCAGcGCGGCCUu -3'
miRNA:   3'- gCGGCGca---UGUGA-CCGUUcCGCCGGG- -5'
31796 3' -60.3 NC_006938.1 + 60707 0.66 0.463996
Target:  5'- uGgUGUG-ACACUGGCAAcGGU-GCCCa -3'
miRNA:   3'- gCgGCGCaUGUGACCGUU-CCGcCGGG- -5'
31796 3' -60.3 NC_006938.1 + 47640 0.67 0.448831
Target:  5'- cCGCCGUGUucuugggcuugguuCGCUuguucGCAAGGaauaGGCCCu -3'
miRNA:   3'- -GCGGCGCAu-------------GUGAc----CGUUCCg---CCGGG- -5'
31796 3' -60.3 NC_006938.1 + 63050 0.67 0.417543
Target:  5'- uGCUGgGaAUACUGGCAGGaGCGuacGCCUc -3'
miRNA:   3'- gCGGCgCaUGUGACCGUUC-CGC---CGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.