miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31815 5' -58.2 NC_006938.1 + 20507 0.66 0.669319
Target:  5'- aGUUGCCAgCGAUGUCCuugggcaccuGUCGCGaGGg -3'
miRNA:   3'- cCAGCGGUaGUUGCAGG----------CGGCGCgCC- -5'
31815 5' -58.2 NC_006938.1 + 29441 0.66 0.65888
Target:  5'- aGGUUGCaCAUCGccaGUCCGUggguguCGCGCa- -3'
miRNA:   3'- -CCAGCG-GUAGUug-CAGGCG------GCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 21753 0.66 0.65888
Target:  5'- aGGUUGCCcgaCAGCuggaCCG-CGCGCGGc -3'
miRNA:   3'- -CCAGCGGua-GUUGca--GGCgGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 21641 0.66 0.65888
Target:  5'- cGGUgaCCAgggCGACGUgggCCG-CGCGCGGg -3'
miRNA:   3'- -CCAgcGGUa--GUUGCA---GGCgGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 52052 0.66 0.65888
Target:  5'- --aCGCCG-CGuCGUCCGCgcuguccaacuuCGUGCGGa -3'
miRNA:   3'- ccaGCGGUaGUuGCAGGCG------------GCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 51270 0.66 0.627462
Target:  5'- gGGUUGgCggCGAUGgcagCCGUcagCGCGCGGa -3'
miRNA:   3'- -CCAGCgGuaGUUGCa---GGCG---GCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 61772 0.67 0.616985
Target:  5'- cGUCGUCAcaGAgGUCCggGCCGCGCc- -3'
miRNA:   3'- cCAGCGGUagUUgCAGG--CGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 19145 0.67 0.606521
Target:  5'- cGUaGCCcgCcuCGUCCGCCGCGaccauGGc -3'
miRNA:   3'- cCAgCGGuaGuuGCAGGCGGCGCg----CC- -5'
31815 5' -58.2 NC_006938.1 + 18127 0.67 0.606521
Target:  5'- cGGUCcUCGUCGACcuugaCGCCGCGCu- -3'
miRNA:   3'- -CCAGcGGUAGUUGcag--GCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 33615 0.67 0.606521
Target:  5'- cGUCGCCGacguggucuUCAGCGUCCGagucuaCGUcauCGGg -3'
miRNA:   3'- cCAGCGGU---------AGUUGCAGGCg-----GCGc--GCC- -5'
31815 5' -58.2 NC_006938.1 + 34683 0.67 0.606521
Target:  5'- -cUUGgCGUCGGCGUCCGUCG-GCaGGu -3'
miRNA:   3'- ccAGCgGUAGUUGCAGGCGGCgCG-CC- -5'
31815 5' -58.2 NC_006938.1 + 32718 0.67 0.585659
Target:  5'- --cCGCaagCAGC-UCUGCCGCGUGGc -3'
miRNA:   3'- ccaGCGguaGUUGcAGGCGGCGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 41281 0.67 0.585659
Target:  5'- --cCGCCAUCAACuUCCggGCCG-GUGGc -3'
miRNA:   3'- ccaGCGGUAGUUGcAGG--CGGCgCGCC- -5'
31815 5' -58.2 NC_006938.1 + 32049 0.67 0.584619
Target:  5'- cGGUUGCCAUagccagaGGgGUCCGCCuucuugaGCGCc- -3'
miRNA:   3'- -CCAGCGGUAg------UUgCAGGCGG-------CGCGcc -5'
31815 5' -58.2 NC_006938.1 + 51120 0.67 0.575277
Target:  5'- ---aGCuCAUCggUGUCCaGCUGgCGCGGa -3'
miRNA:   3'- ccagCG-GUAGuuGCAGG-CGGC-GCGCC- -5'
31815 5' -58.2 NC_006938.1 + 24866 0.68 0.534242
Target:  5'- --gCGCCAUggCGGCGaUCGCCGCGCc- -3'
miRNA:   3'- ccaGCGGUA--GUUGCaGGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 40032 0.68 0.514108
Target:  5'- aGUUGCCGUUcGC-UCCGCCacugaGCGUGGc -3'
miRNA:   3'- cCAGCGGUAGuUGcAGGCGG-----CGCGCC- -5'
31815 5' -58.2 NC_006938.1 + 51013 0.68 0.511114
Target:  5'- cGG-CGCguUCGACGcugccaccggggccUCCGCCGCGUu- -3'
miRNA:   3'- -CCaGCGguAGUUGC--------------AGGCGGCGCGcc -5'
31815 5' -58.2 NC_006938.1 + 24009 0.68 0.504157
Target:  5'- cGGUUGCaccCGUacagGugGUCCGCCcGCGCGu -3'
miRNA:   3'- -CCAGCG---GUAg---UugCAGGCGG-CGCGCc -5'
31815 5' -58.2 NC_006938.1 + 38525 0.68 0.504157
Target:  5'- cGUCGUUGUCGAgGUCgCGCCaCGaCGGg -3'
miRNA:   3'- cCAGCGGUAGUUgCAG-GCGGcGC-GCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.