miRNA display CGI


Results 1 - 20 of 52 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31821 5' -55 NC_006938.1 + 10265 0.65 0.813039
Target:  5'- cGGCcguGACCU--GGUCCGAGGucuuUCCCu -3'
miRNA:   3'- cCCGc--UUGGAcuUCAGGUUCCu---GGGG- -5'
31821 5' -55 NC_006938.1 + 50180 0.65 0.813039
Target:  5'- cGGCGAcgaucgcgGCCUGAGcGUUgGcGGGACCUg -3'
miRNA:   3'- cCCGCU--------UGGACUU-CAGgU-UCCUGGGg -5'
31821 5' -55 NC_006938.1 + 63365 0.65 0.813039
Target:  5'- cGGCGAGCCgGucGcCCAcgcgguGGACCUg -3'
miRNA:   3'- cCCGCUUGGaCuuCaGGUu-----CCUGGGg -5'
31821 5' -55 NC_006938.1 + 55888 0.65 0.813039
Target:  5'- -aGCGAGCgaGGGcUCCGgccAGGugCCCg -3'
miRNA:   3'- ccCGCUUGgaCUUcAGGU---UCCugGGG- -5'
31821 5' -55 NC_006938.1 + 6805 0.65 0.813039
Target:  5'- aGGCcGACCUGuccacggucgacAAGgCCGAGGGCUCUu -3'
miRNA:   3'- cCCGcUUGGAC------------UUCaGGUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 31070 0.66 0.798066
Target:  5'- cGGCGGACCUuucugggcucuucaaGGacugaugcaucaGGUCC-AGGACCUg -3'
miRNA:   3'- cCCGCUUGGA---------------CU------------UCAGGuUCCUGGGg -5'
31821 5' -55 NC_006938.1 + 27125 0.66 0.794255
Target:  5'- uGGUGGugCacggGcAGGUCU-GGGACCCCa -3'
miRNA:   3'- cCCGCUugGa---C-UUCAGGuUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 54469 0.66 0.794255
Target:  5'- aGGUG-GCgUGAAGUUCucuguguaGAGGGCCUCg -3'
miRNA:   3'- cCCGCuUGgACUUCAGG--------UUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 20027 0.66 0.794255
Target:  5'- aGGCGcucCCUGGAGUCCuccacgccgacGGGGAagccguuguaUCCCa -3'
miRNA:   3'- cCCGCuu-GGACUUCAGG-----------UUCCU----------GGGG- -5'
31821 5' -55 NC_006938.1 + 63499 0.66 0.794255
Target:  5'- gGGGCGGugaCUGGcgcacGUUCAAGGACggaCCg -3'
miRNA:   3'- -CCCGCUug-GACUu----CAGGUUCCUGg--GG- -5'
31821 5' -55 NC_006938.1 + 14725 0.66 0.784612
Target:  5'- uGGCGAACCgGAcc-UCGAGGuuCCCg -3'
miRNA:   3'- cCCGCUUGGaCUucaGGUUCCugGGG- -5'
31821 5' -55 NC_006938.1 + 63281 0.66 0.774817
Target:  5'- --uCGAAC--GAGGUCCGgguGGACCCCu -3'
miRNA:   3'- cccGCUUGgaCUUCAGGUu--CCUGGGG- -5'
31821 5' -55 NC_006938.1 + 15296 0.66 0.774817
Target:  5'- uGGCGucgcgcAGCUUGGAGaa-GAGGACCCUc -3'
miRNA:   3'- cCCGC------UUGGACUUCaggUUCCUGGGG- -5'
31821 5' -55 NC_006938.1 + 17793 0.66 0.774817
Target:  5'- cGGaGAGCa-GAAGUCCAAG-ACCCUc -3'
miRNA:   3'- cCCgCUUGgaCUUCAGGUUCcUGGGG- -5'
31821 5' -55 NC_006938.1 + 1305 0.67 0.74462
Target:  5'- aGGGCG-GCCaGAAGUCCGGccgugagaguGGACacuaugaCCa -3'
miRNA:   3'- -CCCGCuUGGaCUUCAGGUU----------CCUGg------GG- -5'
31821 5' -55 NC_006938.1 + 20501 0.67 0.74462
Target:  5'- cGGGCGAguuGCCagcGAuGUCCuuGGGCaCCUg -3'
miRNA:   3'- -CCCGCU---UGGa--CUuCAGGuuCCUG-GGG- -5'
31821 5' -55 NC_006938.1 + 21649 0.67 0.74462
Target:  5'- aGGGCGAcguggGCCgcgcgcGGGUCCAgcugucGGGcaaccuGCCCCg -3'
miRNA:   3'- -CCCGCU-----UGGac----UUCAGGU------UCC------UGGGG- -5'
31821 5' -55 NC_006938.1 + 17465 0.67 0.74462
Target:  5'- aGGGUGGACauguCUGgcGgcugCCAGcuGGACUCCg -3'
miRNA:   3'- -CCCGCUUG----GACuuCa---GGUU--CCUGGGG- -5'
31821 5' -55 NC_006938.1 + 35303 0.67 0.734319
Target:  5'- cGGuCGuGCUUGAuGUCCGAGauGACCUCg -3'
miRNA:   3'- cCC-GCuUGGACUuCAGGUUC--CUGGGG- -5'
31821 5' -55 NC_006938.1 + 47452 0.67 0.734319
Target:  5'- aGGGCGucaucaccGACCUcGAcgccuccggugGGUUCAaccAGGACCUCa -3'
miRNA:   3'- -CCCGC--------UUGGA-CU-----------UCAGGU---UCCUGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.