Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31827 | 5' | -53.5 | NC_006938.1 | + | 27013 | 0.66 | 0.874422 |
Target: 5'- uGGCA-CGGCGAGGAgugggagcgcCGCGUccgCGUCa -3' miRNA: 3'- cCCGUgGCCGUUCUU----------GUGCAa--GCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 29565 | 0.66 | 0.874422 |
Target: 5'- -cGCGCCuGGCAgcagAGAGUugGUcUCGUCGa -3' miRNA: 3'- ccCGUGG-CCGU----UCUUGugCA-AGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 59588 | 0.66 | 0.874422 |
Target: 5'- uGGCauccGCCGcGCcAG-ACAgGUUCGUCGu -3' miRNA: 3'- cCCG----UGGC-CGuUCuUGUgCAAGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 24256 | 0.66 | 0.866581 |
Target: 5'- cGGGCACUcGCAuGGucACACGgaccaCGUCGc -3' miRNA: 3'- -CCCGUGGcCGUuCU--UGUGCaa---GCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 43307 | 0.66 | 0.866581 |
Target: 5'- aGGCACUGGCc-GggUAgGacUCGUCGa -3' miRNA: 3'- cCCGUGGCCGuuCuuGUgCa-AGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 22971 | 0.66 | 0.866581 |
Target: 5'- uGGCAcCCGGC----GCACGUUguaGUCGg -3' miRNA: 3'- cCCGU-GGCCGuucuUGUGCAAg--CAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 45753 | 0.66 | 0.858501 |
Target: 5'- gGGGCaACCGGUucAAGuccgugcgcaaGACACGaUUCGcCGg -3' miRNA: 3'- -CCCG-UGGCCG--UUC-----------UUGUGC-AAGCaGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 654 | 0.66 | 0.858501 |
Target: 5'- cGGCACCGGCcucccACAUGUcgaucgCGUCu -3' miRNA: 3'- cCCGUGGCCGuucu-UGUGCAa-----GCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 58462 | 0.66 | 0.858501 |
Target: 5'- uGGGcCAgCGGCAgcaGGAACGCGaagaaGUUGg -3' miRNA: 3'- -CCC-GUgGCCGU---UCUUGUGCaag--CAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 6377 | 0.66 | 0.850189 |
Target: 5'- --aCGCUGGCGAGcACACGgaaugaUCGUCa -3' miRNA: 3'- cccGUGGCCGUUCuUGUGCa-----AGCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 18016 | 0.66 | 0.850189 |
Target: 5'- cGGUGCUGGUGAGGAUGCGacagcgcggCGUCa -3' miRNA: 3'- cCCGUGGCCGUUCUUGUGCaa-------GCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 4833 | 0.66 | 0.841653 |
Target: 5'- uGGCACCGGCcGAGGA---GUUCGgCGa -3' miRNA: 3'- cCCGUGGCCG-UUCUUgugCAAGCaGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 8062 | 0.67 | 0.814785 |
Target: 5'- cGGGuCGCCGaGCAcgAGGAUggGgaCGUCGa -3' miRNA: 3'- -CCC-GUGGC-CGU--UCUUGugCaaGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 60948 | 0.67 | 0.813859 |
Target: 5'- cGGGuCACCGGUcuGAACcaucucgACGUUUGUg- -3' miRNA: 3'- -CCC-GUGGCCGuuCUUG-------UGCAAGCAgc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 24757 | 0.67 | 0.80544 |
Target: 5'- aGGGCuuCCGGCccagcaagAAGGGCGCGgcgaUCGcCGc -3' miRNA: 3'- -CCCGu-GGCCG--------UUCUUGUGCa---AGCaGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 61426 | 0.67 | 0.80544 |
Target: 5'- uGGCACCGGCccucgacacGGAGCAUcgaGUUCGg-- -3' miRNA: 3'- cCCGUGGCCGu--------UCUUGUG---CAAGCagc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 15862 | 0.67 | 0.795918 |
Target: 5'- uGGGCucugacacACCGGcCAGGuACAUG-UCGUCu -3' miRNA: 3'- -CCCG--------UGGCC-GUUCuUGUGCaAGCAGc -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 46853 | 0.68 | 0.783288 |
Target: 5'- -uGCGCCaGCGGGAGC-CGUcugacucgaggaucUCGUCGa -3' miRNA: 3'- ccCGUGGcCGUUCUUGuGCA--------------AGCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 37928 | 0.68 | 0.766385 |
Target: 5'- cGGGCGgUGGCcAGGGCG-GUggaggCGUCGg -3' miRNA: 3'- -CCCGUgGCCGuUCUUGUgCAa----GCAGC- -5' |
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31827 | 5' | -53.5 | NC_006938.1 | + | 58115 | 0.69 | 0.725166 |
Target: 5'- -uGUGCCGGCGAGGGCGCGgcuuaucUCaUCGa -3' miRNA: 3'- ccCGUGGCCGUUCUUGUGCa------AGcAGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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