miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31830 5' -56 NC_006938.1 + 12545 0.66 0.730536
Target:  5'- aAGGCgauCGUGGCGAUC----AGCacgCGGCg -3'
miRNA:   3'- -UCCG---GCACCGUUAGcacuUCGa--GCCG- -5'
31830 5' -56 NC_006938.1 + 51930 0.66 0.720044
Target:  5'- gGGGUCa-GGCGGcgGUG-GGCUCGGCg -3'
miRNA:   3'- -UCCGGcaCCGUUagCACuUCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 38128 0.66 0.720044
Target:  5'- cGGCCuUGGCcAUCc----GCUCGGCg -3'
miRNA:   3'- uCCGGcACCGuUAGcacuuCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 48166 0.66 0.720044
Target:  5'- -cGCUGUGGag--CG-GAcGCUCGGCa -3'
miRNA:   3'- ucCGGCACCguuaGCaCUuCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 36924 0.66 0.709467
Target:  5'- -cGCCGUGGCGAUUGccUGcAGCUuCuGCa -3'
miRNA:   3'- ucCGGCACCGUUAGC--ACuUCGA-GcCG- -5'
31830 5' -56 NC_006938.1 + 55231 0.66 0.698816
Target:  5'- --aCUGUGGCAucGUCGcugUGAAGUacaaUCGGCa -3'
miRNA:   3'- uccGGCACCGU--UAGC---ACUUCG----AGCCG- -5'
31830 5' -56 NC_006938.1 + 37843 0.66 0.688101
Target:  5'- cGGCCagcaucagGGCAucGUCGUGGGcCUCGGg -3'
miRNA:   3'- uCCGGca------CCGU--UAGCACUUcGAGCCg -5'
31830 5' -56 NC_006938.1 + 3774 0.66 0.688101
Target:  5'- cGGGCgCgGUGGCAAggGUGGcaucGCcCGGCa -3'
miRNA:   3'- -UCCG-G-CACCGUUagCACUu---CGaGCCG- -5'
31830 5' -56 NC_006938.1 + 28498 0.66 0.687027
Target:  5'- gAGGagcuccuCCGUGGCAAgCGcc--GCUCGGCc -3'
miRNA:   3'- -UCC-------GGCACCGUUaGCacuuCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 21585 0.66 0.674096
Target:  5'- aAGGCCGac-CAGUcCGUGGAGCUCucgcucuucccacaGGCu -3'
miRNA:   3'- -UCCGGCaccGUUA-GCACUUCGAG--------------CCG- -5'
31830 5' -56 NC_006938.1 + 38059 0.67 0.644824
Target:  5'- aAGGCCGcUGGCAccacuGUCGguggcaaGAAGCcCGcGCc -3'
miRNA:   3'- -UCCGGC-ACCGU-----UAGCa------CUUCGaGC-CG- -5'
31830 5' -56 NC_006938.1 + 16253 0.67 0.644824
Target:  5'- aAGGCCauccaGUGGCAcgaCGUGccgGAGCgcugggUCGGCg -3'
miRNA:   3'- -UCCGG-----CACCGUua-GCAC---UUCG------AGCCG- -5'
31830 5' -56 NC_006938.1 + 51377 0.67 0.633951
Target:  5'- cGGUCGUGGCGAgcuggCG-GAAcGCgccacCGGCc -3'
miRNA:   3'- uCCGGCACCGUUa----GCaCUU-CGa----GCCG- -5'
31830 5' -56 NC_006938.1 + 30013 0.67 0.623077
Target:  5'- uGGCCGUGGCAGcUCaUG-AGC-CaGGCc -3'
miRNA:   3'- uCCGGCACCGUU-AGcACuUCGaG-CCG- -5'
31830 5' -56 NC_006938.1 + 46654 0.68 0.611124
Target:  5'- gGGGCCGUgucgccucuccagGGCu-UCGUGGAGUcacucgCGGUc -3'
miRNA:   3'- -UCCGGCA-------------CCGuuAGCACUUCGa-----GCCG- -5'
31830 5' -56 NC_006938.1 + 34983 0.68 0.584058
Target:  5'- cGGCCGgGGCGAaCGUGuugucgacgaaguccAGGUUgGGCg -3'
miRNA:   3'- uCCGGCaCCGUUaGCAC---------------UUCGAgCCG- -5'
31830 5' -56 NC_006938.1 + 52250 0.69 0.547662
Target:  5'- gAGGagGUGGCcuguUCG-GAgGGCUCGGCg -3'
miRNA:   3'- -UCCggCACCGuu--AGCaCU-UCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 27653 0.69 0.547662
Target:  5'- -aGUgGUGGCGGaccCGUGGguuucccgAGCUCGGCg -3'
miRNA:   3'- ucCGgCACCGUUa--GCACU--------UCGAGCCG- -5'
31830 5' -56 NC_006938.1 + 21168 0.69 0.547662
Target:  5'- gGGGCCGgaaggUGGUcGUCGUGAuccGGCcguUCGGg -3'
miRNA:   3'- -UCCGGC-----ACCGuUAGCACU---UCG---AGCCg -5'
31830 5' -56 NC_006938.1 + 51020 0.7 0.465403
Target:  5'- cGGUCGUGGCGAagucUCGguccAGGCccUCGGCc -3'
miRNA:   3'- uCCGGCACCGUU----AGCac--UUCG--AGCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.