miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31857 5' -61.9 NC_006938.1 + 38154 0.66 0.406565
Target:  5'- uGUCGGgAGCCGgugGCaugGuCCACUuGGCUCc -3'
miRNA:   3'- -CAGCCgUUGGCa--CGg--C-GGUGG-CCGAG- -5'
31857 5' -61.9 NC_006938.1 + 4183 0.66 0.406565
Target:  5'- -aCGGCuccgacaucgaGACCcUGCUGaCCGCCGaGCUCc -3'
miRNA:   3'- caGCCG-----------UUGGcACGGC-GGUGGC-CGAG- -5'
31857 5' -61.9 NC_006938.1 + 38252 0.66 0.397791
Target:  5'- --gGGgAGCCaaGUGgaccaUGCCACCGGCUCc -3'
miRNA:   3'- cagCCgUUGG--CACg----GCGGUGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 27399 0.66 0.389139
Target:  5'- cGUCuGGgGACCGUGCUccuggauguauGCCACC-GCUg -3'
miRNA:   3'- -CAG-CCgUUGGCACGG-----------CGGUGGcCGAg -5'
31857 5' -61.9 NC_006938.1 + 25526 0.66 0.380612
Target:  5'- -aCGGCAGCUcca-CGUgCACCGGCUCg -3'
miRNA:   3'- caGCCGUUGGcacgGCG-GUGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 26808 0.66 0.380612
Target:  5'- -cUGGCGauGCCGacGuaGCCACCGGuCUCg -3'
miRNA:   3'- caGCCGU--UGGCa-CggCGGUGGCC-GAG- -5'
31857 5' -61.9 NC_006938.1 + 55469 0.67 0.339887
Target:  5'- cGUCGGCAcACUGcucuucCCGCCACCcGGC-Ca -3'
miRNA:   3'- -CAGCCGU-UGGCac----GGCGGUGG-CCGaG- -5'
31857 5' -61.9 NC_006938.1 + 6125 0.67 0.339887
Target:  5'- --gGGCGACUaUGCCggaGCCACgGGCUa -3'
miRNA:   3'- cagCCGUUGGcACGG---CGGUGgCCGAg -5'
31857 5' -61.9 NC_006938.1 + 55505 0.67 0.33213
Target:  5'- --gGGCGagaaGCCcagGCCGCCugCGGCg- -3'
miRNA:   3'- cagCCGU----UGGca-CGGCGGugGCCGag -5'
31857 5' -61.9 NC_006938.1 + 39228 0.67 0.33213
Target:  5'- uGUCGGUcacGCCuacGUcGCCGCCucGCCGGCa- -3'
miRNA:   3'- -CAGCCGu--UGG---CA-CGGCGG--UGGCCGag -5'
31857 5' -61.9 NC_006938.1 + 41483 0.68 0.31701
Target:  5'- cGUCGGgGACUuUGCCcagGCCGCCGcGCa- -3'
miRNA:   3'- -CAGCCgUUGGcACGG---CGGUGGC-CGag -5'
31857 5' -61.9 NC_006938.1 + 46031 0.68 0.298137
Target:  5'- -aUGGCAuagaccagguucuggGCCGUcuCCGCCGCCgaGGCUCc -3'
miRNA:   3'- caGCCGU---------------UGGCAc-GGCGGUGG--CCGAG- -5'
31857 5' -61.9 NC_006938.1 + 1417 0.68 0.295312
Target:  5'- -aCGGCGGCCuUGCUGCCAa-GGCg- -3'
miRNA:   3'- caGCCGUUGGcACGGCGGUggCCGag -5'
31857 5' -61.9 NC_006938.1 + 29072 0.68 0.295312
Target:  5'- uGUCGG--GCCGUGUCcauCCggACCGGCUCu -3'
miRNA:   3'- -CAGCCguUGGCACGGc--GG--UGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 8555 0.68 0.2815
Target:  5'- cUCGGCGcUCGUGCCaGU--CCGGCUCc -3'
miRNA:   3'- cAGCCGUuGGCACGG-CGguGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 51010 0.69 0.255421
Target:  5'- aGUCGGCGcguUCGacGCUGCCACCGGggcCUCc -3'
miRNA:   3'- -CAGCCGUu--GGCa-CGGCGGUGGCC---GAG- -5'
31857 5' -61.9 NC_006938.1 + 48179 0.7 0.219506
Target:  5'- cGUCGGCAAagaagauCCGgaugaGCUugguGCCACCGGcCUCg -3'
miRNA:   3'- -CAGCCGUU-------GGCa----CGG----CGGUGGCC-GAG- -5'
31857 5' -61.9 NC_006938.1 + 10181 0.7 0.214587
Target:  5'- -cCGGCAugugcACCGUGCgaucauaGCCguagcugaagACCGGCUCg -3'
miRNA:   3'- caGCCGU-----UGGCACGg------CGG----------UGGCCGAG- -5'
31857 5' -61.9 NC_006938.1 + 55967 0.71 0.203995
Target:  5'- uUCGGCAACCGUGUC-CCGaacaucaCGGCg- -3'
miRNA:   3'- cAGCCGUUGGCACGGcGGUg------GCCGag -5'
31857 5' -61.9 NC_006938.1 + 31539 0.71 0.193859
Target:  5'- -aCGGaCAACC-UGCCaGCCACCacuGGCUCc -3'
miRNA:   3'- caGCC-GUUGGcACGG-CGGUGG---CCGAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.