Results 1 - 20 of 48 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31870 | 3' | -52 | NC_006938.1 | + | 17592 | 0.66 | 0.898505 |
Target: 5'- gCUCCgcuacaucaagGACCAGUUcaagacguucgacgGGGAgcuGGUCGgAGCCa -3' miRNA: 3'- -GAGG-----------CUGGUUAG--------------UCCU---UCAGUgUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 40864 | 0.66 | 0.886182 |
Target: 5'- --aCGACCucggAGGAcguuGUCACGGCCc -3' miRNA: 3'- gagGCUGGuuagUCCUu---CAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 10182 | 0.66 | 0.885433 |
Target: 5'- cCUCgGACCA-------GGUCACGGCCg -3' miRNA: 3'- -GAGgCUGGUuaguccuUCAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 27030 | 0.66 | 0.886182 |
Target: 5'- aCUCCGGagGGaCAGGcccAGGUCACgGGCCg -3' miRNA: 3'- -GAGGCUggUUaGUCC---UUCAGUG-UCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 59882 | 0.66 | 0.893525 |
Target: 5'- gCUuuGGCguuggCAAUC-GGAAcgcuGUCACGGCCa -3' miRNA: 3'- -GAggCUG-----GUUAGuCCUU----CAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 45972 | 0.66 | 0.886182 |
Target: 5'- gUCCG-CC-GUCAGcGAGGaCAgGGCCg -3' miRNA: 3'- gAGGCuGGuUAGUC-CUUCaGUgUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 24561 | 0.66 | 0.893525 |
Target: 5'- cCUCCGugCAGUCuucgucccagAGGcGGUgcCACgGGCCg -3' miRNA: 3'- -GAGGCugGUUAG----------UCCuUCA--GUG-UCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 41447 | 0.66 | 0.893525 |
Target: 5'- -gCCGAUCAcaGUCAGGuccAGUC-CcGCCa -3' miRNA: 3'- gaGGCUGGU--UAGUCCu--UCAGuGuCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 11053 | 0.66 | 0.903351 |
Target: 5'- -cCCGGCCGAUguguggcagcaagugCAGGGGaacgcggcucGUCGCGGCg -3' miRNA: 3'- gaGGCUGGUUA---------------GUCCUU----------CAGUGUCGg -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 58206 | 0.66 | 0.900598 |
Target: 5'- uCUCCcacGACCAacGUCuGGGAGGUgAUcGCCu -3' miRNA: 3'- -GAGG---CUGGU--UAG-UCCUUCAgUGuCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 1113 | 0.66 | 0.907397 |
Target: 5'- cCUCCGAuCCGAUC--GAGGUCcagaaggacauGCAGCa -3' miRNA: 3'- -GAGGCU-GGUUAGucCUUCAG-----------UGUCGg -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 8703 | 0.66 | 0.907397 |
Target: 5'- uUUCGACCAccuGUCaAGGAAGaacaaaaugCACGGaCCa -3' miRNA: 3'- gAGGCUGGU---UAG-UCCUUCa--------GUGUC-GG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 5576 | 0.66 | 0.907397 |
Target: 5'- ---aGGCCGAgaAGGAGGUCGCcgcucucgaGGCCa -3' miRNA: 3'- gaggCUGGUUagUCCUUCAGUG---------UCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 39835 | 0.67 | 0.878574 |
Target: 5'- -aCCGGCCGGaCGGacacaacccuGAccGUCACAGCCa -3' miRNA: 3'- gaGGCUGGUUaGUC----------CUu-CAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 40956 | 0.67 | 0.862586 |
Target: 5'- -cCCGcgaugggaauGCCAGUCAGGAAGUaaCACAuggGCa -3' miRNA: 3'- gaGGC----------UGGUUAGUCCUUCA--GUGU---CGg -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 5680 | 0.67 | 0.862586 |
Target: 5'- ---gGACUGG--AGGAGGUCACAGUCa -3' miRNA: 3'- gaggCUGGUUagUCCUUCAGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 29599 | 0.67 | 0.85422 |
Target: 5'- gCUCCGACCu----GGAcuGUC-CGGCCu -3' miRNA: 3'- -GAGGCUGGuuaguCCUu-CAGuGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 50858 | 0.67 | 0.85337 |
Target: 5'- gCUCCG-CCAGcUCGGcaccgacGGAGagaUCACGGCCg -3' miRNA: 3'- -GAGGCuGGUU-AGUC-------CUUC---AGUGUCGG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 40171 | 0.67 | 0.845617 |
Target: 5'- gCUCUGGCaCAAUCAcagucGGugcacAGGUCACGGaCCa -3' miRNA: 3'- -GAGGCUG-GUUAGU-----CC-----UUCAGUGUC-GG- -5' |
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31870 | 3' | -52 | NC_006938.1 | + | 25650 | 0.67 | 0.845617 |
Target: 5'- -cCCGACCcGUucCAGGcguGGGUCAC-GCCg -3' miRNA: 3'- gaGGCUGGuUA--GUCC---UUCAGUGuCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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