miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 3' -52 NC_006938.1 + 1113 0.66 0.907397
Target:  5'- cCUCCGAuCCGAUC--GAGGUCcagaaggacauGCAGCa -3'
miRNA:   3'- -GAGGCU-GGUUAGucCUUCAG-----------UGUCGg -5'
31870 3' -52 NC_006938.1 + 5576 0.66 0.907397
Target:  5'- ---aGGCCGAgaAGGAGGUCGCcgcucucgaGGCCa -3'
miRNA:   3'- gaggCUGGUUagUCCUUCAGUG---------UCGG- -5'
31870 3' -52 NC_006938.1 + 5680 0.67 0.862586
Target:  5'- ---gGACUGG--AGGAGGUCACAGUCa -3'
miRNA:   3'- gaggCUGGUUagUCCUUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 8368 0.7 0.716692
Target:  5'- -gCCGACCAc-CGGGAGGUCucccucgaAGCCc -3'
miRNA:   3'- gaGGCUGGUuaGUCCUUCAGug------UCGG- -5'
31870 3' -52 NC_006938.1 + 8703 0.66 0.907397
Target:  5'- uUUCGACCAccuGUCaAGGAAGaacaaaaugCACGGaCCa -3'
miRNA:   3'- gAGGCUGGU---UAG-UCCUUCa--------GUGUC-GG- -5'
31870 3' -52 NC_006938.1 + 10182 0.66 0.885433
Target:  5'- cCUCgGACCA-------GGUCACGGCCg -3'
miRNA:   3'- -GAGgCUGGUuaguccuUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 10981 0.68 0.809012
Target:  5'- -aUCGGCCgGGUCuGGGGAGcCAUGGCCu -3'
miRNA:   3'- gaGGCUGG-UUAG-UCCUUCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 11053 0.66 0.903351
Target:  5'- -cCCGGCCGAUguguggcagcaagugCAGGGGaacgcggcucGUCGCGGCg -3'
miRNA:   3'- gaGGCUGGUUA---------------GUCCUU----------CAGUGUCGg -5'
31870 3' -52 NC_006938.1 + 13290 0.71 0.639656
Target:  5'- -aCCGggucauACCGGUCAGGA--UCAUGGCCa -3'
miRNA:   3'- gaGGC------UGGUUAGUCCUucAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 15006 0.71 0.632985
Target:  5'- cCUCCGGCCAcuucgaaacgagggaGUuuguggucgugCAGGAguAGaUCACAGCCu -3'
miRNA:   3'- -GAGGCUGGU---------------UA-----------GUCCU--UC-AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 17309 0.68 0.808055
Target:  5'- uCUCCG-CCAGguugcccUCGcGGAGGUgGCAGaCCa -3'
miRNA:   3'- -GAGGCuGGUU-------AGU-CCUUCAgUGUC-GG- -5'
31870 3' -52 NC_006938.1 + 17477 0.72 0.57318
Target:  5'- cCUCCGugCGGaCGGGcGGUCACAucGCUg -3'
miRNA:   3'- -GAGGCugGUUaGUCCuUCAGUGU--CGG- -5'
31870 3' -52 NC_006938.1 + 17592 0.66 0.898505
Target:  5'- gCUCCgcuacaucaagGACCAGUUcaagacguucgacgGGGAgcuGGUCGgAGCCa -3'
miRNA:   3'- -GAGG-----------CUGGUUAG--------------UCCU---UCAGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 21145 0.67 0.845617
Target:  5'- aUCCGGCCGuUCGGGAcgauugacaugAG-CACccacgGGCCg -3'
miRNA:   3'- gAGGCUGGUuAGUCCU-----------UCaGUG-----UCGG- -5'
31870 3' -52 NC_006938.1 + 24561 0.66 0.893525
Target:  5'- cCUCCGugCAGUCuucgucccagAGGcGGUgcCACgGGCCg -3'
miRNA:   3'- -GAGGCugGUUAG----------UCCuUCA--GUG-UCGG- -5'
31870 3' -52 NC_006938.1 + 25462 0.68 0.827734
Target:  5'- gUUCGACCAGcUGGcGAAG-CACAGCUu -3'
miRNA:   3'- gAGGCUGGUUaGUC-CUUCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 25650 0.67 0.845617
Target:  5'- -cCCGACCcGUucCAGGcguGGGUCAC-GCCg -3'
miRNA:   3'- gaGGCUGGuUA--GUCC---UUCAGUGuCGG- -5'
31870 3' -52 NC_006938.1 + 26778 0.75 0.456951
Target:  5'- uUCCGguugaaguacucGCUGAUCAGGAAGaUCGCGGUCc -3'
miRNA:   3'- gAGGC------------UGGUUAGUCCUUC-AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 27030 0.66 0.886182
Target:  5'- aCUCCGGagGGaCAGGcccAGGUCACgGGCCg -3'
miRNA:   3'- -GAGGCUggUUaGUCC---UUCAGUG-UCGG- -5'
31870 3' -52 NC_006938.1 + 29599 0.67 0.85422
Target:  5'- gCUCCGACCu----GGAcuGUC-CGGCCu -3'
miRNA:   3'- -GAGGCUGGuuaguCCUu-CAGuGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.