miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 3' -52 NC_006938.1 + 59882 0.66 0.893525
Target:  5'- gCUuuGGCguuggCAAUC-GGAAcgcuGUCACGGCCa -3'
miRNA:   3'- -GAggCUG-----GUUAGuCCUU----CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 29599 0.67 0.85422
Target:  5'- gCUCCGACCu----GGAcuGUC-CGGCCu -3'
miRNA:   3'- -GAGGCUGGuuaguCCUu-CAGuGUCGG- -5'
31870 3' -52 NC_006938.1 + 5680 0.67 0.862586
Target:  5'- ---gGACUGG--AGGAGGUCACAGUCa -3'
miRNA:   3'- gaggCUGGUUagUCCUUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 40956 0.67 0.862586
Target:  5'- -cCCGcgaugggaauGCCAGUCAGGAAGUaaCACAuggGCa -3'
miRNA:   3'- gaGGC----------UGGUUAGUCCUUCA--GUGU---CGg -5'
31870 3' -52 NC_006938.1 + 41152 0.67 0.877798
Target:  5'- gCUCCuucGCCGcgCGGGAccgAGUCACAacguucaagacccGCCu -3'
miRNA:   3'- -GAGGc--UGGUuaGUCCU---UCAGUGU-------------CGG- -5'
31870 3' -52 NC_006938.1 + 38583 0.67 0.878574
Target:  5'- cCUCgGACCAGgagaucgCAGuucGUCugAGCCg -3'
miRNA:   3'- -GAGgCUGGUUa------GUCcuuCAGugUCGG- -5'
31870 3' -52 NC_006938.1 + 39835 0.67 0.878574
Target:  5'- -aCCGGCCGGaCGGacacaacccuGAccGUCACAGCCa -3'
miRNA:   3'- gaGGCUGGUUaGUC----------CUu-CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 10182 0.66 0.885433
Target:  5'- cCUCgGACCA-------GGUCACGGCCg -3'
miRNA:   3'- -GAGgCUGGUuaguccuUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 40864 0.66 0.886182
Target:  5'- --aCGACCucggAGGAcguuGUCACGGCCc -3'
miRNA:   3'- gagGCUGGuuagUCCUu---CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 50858 0.67 0.85337
Target:  5'- gCUCCG-CCAGcUCGGcaccgacGGAGagaUCACGGCCg -3'
miRNA:   3'- -GAGGCuGGUU-AGUC-------CUUC---AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 25650 0.67 0.845617
Target:  5'- -cCCGACCcGUucCAGGcguGGGUCAC-GCCg -3'
miRNA:   3'- gaGGCUGGuUA--GUCC---UUCAGUGuCGG- -5'
31870 3' -52 NC_006938.1 + 40171 0.67 0.845617
Target:  5'- gCUCUGGCaCAAUCAcagucGGugcacAGGUCACGGaCCa -3'
miRNA:   3'- -GAGGCUG-GUUAGU-----CC-----UUCAGUGUC-GG- -5'
31870 3' -52 NC_006938.1 + 52893 0.73 0.551321
Target:  5'- uCUUCGACCGGauccUCAGcaaGAucGUCACGGCCa -3'
miRNA:   3'- -GAGGCUGGUU----AGUC---CUu-CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 17477 0.72 0.57318
Target:  5'- cCUCCGugCGGaCGGGcGGUCACAucGCUg -3'
miRNA:   3'- -GAGGCugGUUaGUCCuUCAGUGU--CGG- -5'
31870 3' -52 NC_006938.1 + 56765 0.72 0.606317
Target:  5'- -gUCGcCCAGUCAGGcGGUgGCAGCa -3'
miRNA:   3'- gaGGCuGGUUAGUCCuUCAgUGUCGg -5'
31870 3' -52 NC_006938.1 + 37460 0.71 0.627425
Target:  5'- gUCUGGggcgagcUCAAUCacgAGGAGGUCAUGGCCa -3'
miRNA:   3'- gAGGCU-------GGUUAG---UCCUUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 13290 0.71 0.639656
Target:  5'- -aCCGggucauACCGGUCAGGA--UCAUGGCCa -3'
miRNA:   3'- gaGGC------UGGUUAGUCCUucAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 40125 0.69 0.748657
Target:  5'- -gCCGGUCAGcCGGGu-GUCGCGGCCg -3'
miRNA:   3'- gaGGCUGGUUaGUCCuuCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 10981 0.68 0.809012
Target:  5'- -aUCGGCCgGGUCuGGGGAGcCAUGGCCu -3'
miRNA:   3'- gaGGCUGG-UUAG-UCCUUCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 25462 0.68 0.827734
Target:  5'- gUUCGACCAGcUGGcGAAG-CACAGCUu -3'
miRNA:   3'- gAGGCUGGUUaGUC-CUUCaGUGUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.