miRNA display CGI


Results 1 - 20 of 48 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 3' -52 NC_006938.1 + 39808 1.13 0.00136
Target:  5'- gCUCCGACCAAUCAGGAAGUCACAGCCa -3'
miRNA:   3'- -GAGGCUGGUUAGUCCUUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 26778 0.75 0.456951
Target:  5'- uUCCGguugaaguacucGCUGAUCAGGAAGaUCGCGGUCc -3'
miRNA:   3'- gAGGC------------UGGUUAGUCCUUC-AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 38580 0.74 0.487529
Target:  5'- aCUCCGGCC-GUCAGGgcGaUGCGGUCa -3'
miRNA:   3'- -GAGGCUGGuUAGUCCuuCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 52893 0.73 0.551321
Target:  5'- uCUUCGACCGGauccUCAGcaaGAucGUCACGGCCa -3'
miRNA:   3'- -GAGGCUGGUU----AGUC---CUu-CAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 17477 0.72 0.57318
Target:  5'- cCUCCGugCGGaCGGGcGGUCACAucGCUg -3'
miRNA:   3'- -GAGGCugGUUaGUCCuUCAGUGU--CGG- -5'
31870 3' -52 NC_006938.1 + 42526 0.72 0.606317
Target:  5'- uUCCGGCCG---AGGGAGUgGCAGgCg -3'
miRNA:   3'- gAGGCUGGUuagUCCUUCAgUGUCgG- -5'
31870 3' -52 NC_006938.1 + 56765 0.72 0.606317
Target:  5'- -gUCGcCCAGUCAGGcGGUgGCAGCa -3'
miRNA:   3'- gaGGCuGGUUAGUCCuUCAgUGUCGg -5'
31870 3' -52 NC_006938.1 + 37460 0.71 0.627425
Target:  5'- gUCUGGggcgagcUCAAUCacgAGGAGGUCAUGGCCa -3'
miRNA:   3'- gAGGCU-------GGUUAG---UCCUUCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 15006 0.71 0.632985
Target:  5'- cCUCCGGCCAcuucgaaacgagggaGUuuguggucgugCAGGAguAGaUCACAGCCu -3'
miRNA:   3'- -GAGGCUGGU---------------UA-----------GUCCU--UC-AGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 13290 0.71 0.639656
Target:  5'- -aCCGggucauACCGGUCAGGA--UCAUGGCCa -3'
miRNA:   3'- gaGGC------UGGUUAGUCCUucAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 42255 0.7 0.694936
Target:  5'- aUCgGACCcuucCAGGAccGGUCaACGGCCg -3'
miRNA:   3'- gAGgCUGGuua-GUCCU--UCAG-UGUCGG- -5'
31870 3' -52 NC_006938.1 + 8368 0.7 0.716692
Target:  5'- -gCCGACCAc-CGGGAGGUCucccucgaAGCCc -3'
miRNA:   3'- gaGGCUGGUuaGUCCUUCAGug------UCGG- -5'
31870 3' -52 NC_006938.1 + 40125 0.69 0.748657
Target:  5'- -gCCGGUCAGcCGGGu-GUCGCGGCCg -3'
miRNA:   3'- gaGGCUGGUUaGUCCuuCAGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 45724 0.68 0.799361
Target:  5'- -cUCGAUCGGUCAGGuAGGUCgugacaaaggcgGCGGUCa -3'
miRNA:   3'- gaGGCUGGUUAGUCC-UUCAG------------UGUCGG- -5'
31870 3' -52 NC_006938.1 + 17309 0.68 0.808055
Target:  5'- uCUCCG-CCAGguugcccUCGcGGAGGUgGCAGaCCa -3'
miRNA:   3'- -GAGGCuGGUU-------AGU-CCUUCAgUGUC-GG- -5'
31870 3' -52 NC_006938.1 + 10981 0.68 0.809012
Target:  5'- -aUCGGCCgGGUCuGGGGAGcCAUGGCCu -3'
miRNA:   3'- gaGGCUGG-UUAG-UCCUUCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 56441 0.68 0.809012
Target:  5'- uUCCcuCCAG-CAGGAgGGUCGgAGCCg -3'
miRNA:   3'- gAGGcuGGUUaGUCCU-UCAGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 33113 0.68 0.809012
Target:  5'- cCUCC-ACCugcccucgcuGUCcuGGAAGUCAgAGCCg -3'
miRNA:   3'- -GAGGcUGGu---------UAGu-CCUUCAGUgUCGG- -5'
31870 3' -52 NC_006938.1 + 25462 0.68 0.827734
Target:  5'- gUUCGACCAGcUGGcGAAG-CACAGCUu -3'
miRNA:   3'- gAGGCUGGUUaGUC-CUUCaGUGUCGG- -5'
31870 3' -52 NC_006938.1 + 51552 0.68 0.827734
Target:  5'- gCUCCGGCCGcgacgAGGAuGUCGaAGCCc -3'
miRNA:   3'- -GAGGCUGGUuag--UCCUuCAGUgUCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.