miRNA display CGI


Results 1 - 20 of 56 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31870 5' -54.7 NC_006938.1 + 62786 0.68 0.693259
Target:  5'- uGCGccaGACGCcGCCCUG-CCGagUgGCAGCg -3'
miRNA:   3'- -UGC---CUGUGuUGGGACuGGC--AgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 62242 0.66 0.795918
Target:  5'- cACGGaACGCGACCaagGACgCGaacaUCAcCAGCg -3'
miRNA:   3'- -UGCC-UGUGUUGGga-CUG-GC----AGU-GUCG- -5'
31870 5' -54.7 NC_006938.1 + 59998 0.66 0.776379
Target:  5'- gUGuGACAuCGAuuuCCgUGGCCGUgACAGCg -3'
miRNA:   3'- uGC-CUGU-GUU---GGgACUGGCAgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 56471 0.69 0.639062
Target:  5'- uGCGGACGCcACCCgu-CgCGUUguaGCAGCu -3'
miRNA:   3'- -UGCCUGUGuUGGGacuG-GCAG---UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 55719 0.74 0.367416
Target:  5'- gUGGACAUGGCCCUGuCCuUCGgGGCu -3'
miRNA:   3'- uGCCUGUGUUGGGACuGGcAGUgUCG- -5'
31870 5' -54.7 NC_006938.1 + 55506 0.67 0.725166
Target:  5'- -gGGGCGagaAGCCCaGGCCGcCuGCGGCg -3'
miRNA:   3'- ugCCUGUg--UUGGGaCUGGCaG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 54613 0.68 0.67168
Target:  5'- gACGGACAa---CCgGACCuUCACAGUc -3'
miRNA:   3'- -UGCCUGUguugGGaCUGGcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 54099 0.68 0.693259
Target:  5'- uCGGAUACAGCCCaGACg---GCAGCu -3'
miRNA:   3'- uGCCUGUGUUGGGaCUGgcagUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 53335 0.73 0.402831
Target:  5'- uUGGcUACAACCgCUcGGCCGUCgACAGCa -3'
miRNA:   3'- uGCCuGUGUUGG-GA-CUGGCAG-UGUCG- -5'
31870 5' -54.7 NC_006938.1 + 53096 0.7 0.541846
Target:  5'- uCGGACGC--CCUUGACa-UCACGGCg -3'
miRNA:   3'- uGCCUGUGuuGGGACUGgcAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 52900 0.66 0.766385
Target:  5'- cCGGAUccuCAGCaa-GAUCGUCACGGCc -3'
miRNA:   3'- uGCCUGu--GUUGggaCUGGCAGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 52420 0.7 0.584698
Target:  5'- gGCGGugGCAACaaCCgGcCCGUgACAGUg -3'
miRNA:   3'- -UGCCugUGUUG--GGaCuGGCAgUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 51210 0.68 0.693259
Target:  5'- uUGGGCu--ACuCCUGACUGUCAUuGCg -3'
miRNA:   3'- uGCCUGuguUG-GGACUGGCAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 48653 0.69 0.628164
Target:  5'- gUGGAgGCGACCaaGGCCGUC-CGGa -3'
miRNA:   3'- uGCCUgUGUUGGgaCUGGCAGuGUCg -5'
31870 5' -54.7 NC_006938.1 + 48438 0.65 0.811069
Target:  5'- -aGGACGCGcucgucaccgccGCCCgagccgggguucaGGCCGUCAC-GCu -3'
miRNA:   3'- ugCCUGUGU------------UGGGa------------CUGGCAGUGuCG- -5'
31870 5' -54.7 NC_006938.1 + 48332 0.66 0.80544
Target:  5'- gACGGcCugAACCCcGGCuCGg-GCGGCg -3'
miRNA:   3'- -UGCCuGugUUGGGaCUG-GCagUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 47930 0.72 0.455883
Target:  5'- gGCGGugaugACACGGgCCUGACCGgugacgcguucaaCGCGGCa -3'
miRNA:   3'- -UGCC-----UGUGUUgGGACUGGCa------------GUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 46053 0.66 0.8092
Target:  5'- gACGGACACccaggugaaucugguGGCCCaggcaGACgG-CACGGCc -3'
miRNA:   3'- -UGCCUGUG---------------UUGGGa----CUGgCaGUGUCG- -5'
31870 5' -54.7 NC_006938.1 + 44589 0.68 0.66083
Target:  5'- aAauGAUGCGACCCUGAUUGUCuauGCg -3'
miRNA:   3'- -UgcCUGUGUUGGGACUGGCAGuguCG- -5'
31870 5' -54.7 NC_006938.1 + 44047 0.66 0.795918
Target:  5'- -aGGugGCAACCggGACUGgCGCGGg -3'
miRNA:   3'- ugCCugUGUUGGgaCUGGCaGUGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.