miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31879 5' -60.8 NC_006938.1 + 62561 0.68 0.378624
Target:  5'- gUCGGCgGCCgaggaguuccgucucAUCGUCCCGACCAgUGg- -3'
miRNA:   3'- -AGCUG-CGG---------------UGGCGGGGCUGGUgACac -5'
31879 5' -60.8 NC_006938.1 + 61678 0.78 0.084335
Target:  5'- uUCGGCGgCGCgGCCCgGACCuCUGUGa -3'
miRNA:   3'- -AGCUGCgGUGgCGGGgCUGGuGACAC- -5'
31879 5' -60.8 NC_006938.1 + 60713 0.68 0.392214
Target:  5'- aCGAUggaGCuCGCCGCCCCGAUgGCg--- -3'
miRNA:   3'- aGCUG---CG-GUGGCGGGGCUGgUGacac -5'
31879 5' -60.8 NC_006938.1 + 59690 0.66 0.471363
Target:  5'- aCGAUGCCACCGCCguugaaggugcuugCCGcgcgcuucugaGCCGCgcgucaauUGUGa -3'
miRNA:   3'- aGCUGCGGUGGCGG--------------GGC-----------UGGUG--------ACAC- -5'
31879 5' -60.8 NC_006938.1 + 59423 0.71 0.234037
Target:  5'- gUGGCGCCGCCGgaCCCGGCCgACUu-- -3'
miRNA:   3'- aGCUGCGGUGGCg-GGGCUGG-UGAcac -5'
31879 5' -60.8 NC_006938.1 + 58491 0.66 0.483883
Target:  5'- cUGAUGCCAUacgcaccaGCCCagcaGACCGCcGUGc -3'
miRNA:   3'- aGCUGCGGUGg-------CGGGg---CUGGUGaCAC- -5'
31879 5' -60.8 NC_006938.1 + 55795 0.68 0.350812
Target:  5'- aCGACGCCACCaagGCCCC-ACCcucucgcCUGUc -3'
miRNA:   3'- aGCUGCGGUGG---CGGGGcUGGu------GACAc -5'
31879 5' -60.8 NC_006938.1 + 54493 0.66 0.503448
Target:  5'- -gGugGCC-UCGaCUCCGGCCGCgacagGUGg -3'
miRNA:   3'- agCugCGGuGGC-GGGGCUGGUGa----CAC- -5'
31879 5' -60.8 NC_006938.1 + 52497 0.75 0.122876
Target:  5'- gUUGuuGCCACCGCCCUGGCC-CcGUGg -3'
miRNA:   3'- -AGCugCGGUGGCGGGGCUGGuGaCAC- -5'
31879 5' -60.8 NC_006938.1 + 51723 0.7 0.277649
Target:  5'- gUUGAccuCGCCgACCGCCCCGuCCACa--- -3'
miRNA:   3'- -AGCU---GCGG-UGGCGGGGCuGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 51565 0.69 0.342913
Target:  5'- cUCGACuGCC-CCgGCUCCGGCCGCg--- -3'
miRNA:   3'- -AGCUG-CGGuGG-CGGGGCUGGUGacac -5'
31879 5' -60.8 NC_006938.1 + 51244 0.66 0.493621
Target:  5'- cUCGGCGCuCAUCGCCUucagCGACCAgCUcaaccaggccgGUGg -3'
miRNA:   3'- -AGCUGCG-GUGGCGGG----GCUGGU-GA-----------CAC- -5'
31879 5' -60.8 NC_006938.1 + 46571 0.68 0.392214
Target:  5'- gUCGACcuggaucuuuGCCuuguCUGCCUgGGCCGCUGUc -3'
miRNA:   3'- -AGCUG----------CGGu---GGCGGGgCUGGUGACAc -5'
31879 5' -60.8 NC_006938.1 + 46407 0.7 0.271042
Target:  5'- -gGACGUgACCGCCCUG-CCACUuggaucgaucGUGg -3'
miRNA:   3'- agCUGCGgUGGCGGGGCuGGUGA----------CAC- -5'
31879 5' -60.8 NC_006938.1 + 42529 1.08 0.000488
Target:  5'- aUCGACGCCACCGCCCCGACCACUGUGu -3'
miRNA:   3'- -AGCUGCGGUGGCGGGGCUGGUGACAC- -5'
31879 5' -60.8 NC_006938.1 + 42074 0.71 0.258209
Target:  5'- uUCGGCGCUGCCauccuGCCCCuGCCACUc-- -3'
miRNA:   3'- -AGCUGCGGUGG-----CGGGGcUGGUGAcac -5'
31879 5' -60.8 NC_006938.1 + 41527 0.66 0.503448
Target:  5'- aCGugGCguCCucuggaGCCCCGGCCAacuucucgGUGg -3'
miRNA:   3'- aGCugCGguGG------CGGGGCUGGUga------CAC- -5'
31879 5' -60.8 NC_006938.1 + 41374 0.67 0.440348
Target:  5'- gUGGCGCCACCGgCCCGGaaguugauggcggagUUGCUGa- -3'
miRNA:   3'- aGCUGCGGUGGCgGGGCU---------------GGUGACac -5'
31879 5' -60.8 NC_006938.1 + 39590 0.78 0.084335
Target:  5'- aCGACGUCGCCGCCaCUGGCaCGCUGa- -3'
miRNA:   3'- aGCUGCGGUGGCGG-GGCUG-GUGACac -5'
31879 5' -60.8 NC_006938.1 + 39124 0.69 0.335143
Target:  5'- aUCGGCuCCGCCaagGUCCCGACCGagGUGg -3'
miRNA:   3'- -AGCUGcGGUGG---CGGGGCUGGUgaCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.