miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31882 3' -56.8 NC_006938.1 + 37867 0.66 0.688536
Target:  5'- cUGGCUCCAgGAGaUCCaGGAGAaGCg -3'
miRNA:   3'- cACUGAGGUgCUUcGGGaCCUCUcCG- -5'
31882 3' -56.8 NC_006938.1 + 47856 0.66 0.688536
Target:  5'- uUGGCUCC----GGCCggaGGAGAGGCc -3'
miRNA:   3'- cACUGAGGugcuUCGGga-CCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 23521 0.66 0.677817
Target:  5'- cUGACgggCCAggucgaGGAGCUCUccGGAGAGGg -3'
miRNA:   3'- cACUGa--GGUg-----CUUCGGGA--CCUCUCCg -5'
31882 3' -56.8 NC_006938.1 + 38949 0.66 0.677817
Target:  5'- -cGACUUCAuccCGGAuGCCCgUGGcGAGGUc -3'
miRNA:   3'- caCUGAGGU---GCUU-CGGG-ACCuCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 34450 0.66 0.674593
Target:  5'- -gGGCUCUccaaccucguccugACGAucuaCCgUGGGGAGGCg -3'
miRNA:   3'- caCUGAGG--------------UGCUuc--GGgACCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 17323 0.66 0.673517
Target:  5'- -cGACUCCuucuCGAucuccgccagguuGCCCUcgcGGAGGuGGCa -3'
miRNA:   3'- caCUGAGGu---GCUu------------CGGGA---CCUCU-CCG- -5'
31882 3' -56.8 NC_006938.1 + 40852 0.66 0.667056
Target:  5'- uUGACaCCGuCGAGGUCCcGGuuGGGCu -3'
miRNA:   3'- cACUGaGGU-GCUUCGGGaCCucUCCG- -5'
31882 3' -56.8 NC_006938.1 + 37357 0.66 0.667056
Target:  5'- -gGugUCCAUGAcuGCUgU-GAGAGGCa -3'
miRNA:   3'- caCugAGGUGCUu-CGGgAcCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 62732 0.66 0.656263
Target:  5'- -gGACggcaaCUugGAGGCCUcgGGcacGGAGGCg -3'
miRNA:   3'- caCUGa----GGugCUUCGGGa-CC---UCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 7124 0.66 0.65302
Target:  5'- --aGCUCCACGAgcuccguccggagcGGUCCgagcgcucccgcUGGAGAcGGCg -3'
miRNA:   3'- cacUGAGGUGCU--------------UCGGG------------ACCUCU-CCG- -5'
31882 3' -56.8 NC_006938.1 + 5982 0.66 0.645449
Target:  5'- cUGACUCCAccuugcgcuCGAacAGUCC-GGGGaAGGCu -3'
miRNA:   3'- cACUGAGGU---------GCU--UCGGGaCCUC-UCCG- -5'
31882 3' -56.8 NC_006938.1 + 45812 0.67 0.623794
Target:  5'- cGUGccacguuCUCCGCGcAGCCCgccgaUGGAGAGa- -3'
miRNA:   3'- -CACu------GAGGUGCuUCGGG-----ACCUCUCcg -5'
31882 3' -56.8 NC_006938.1 + 41491 0.67 0.620546
Target:  5'- --aGCUCCACGAcccacaggccgacgAGCCCguc-GAGGCg -3'
miRNA:   3'- cacUGAGGUGCU--------------UCGGGaccuCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 37686 0.67 0.612973
Target:  5'- uGUcGCUCCAgCGggGCCguCUGG-GuGGCg -3'
miRNA:   3'- -CAcUGAGGU-GCuuCGG--GACCuCuCCG- -5'
31882 3' -56.8 NC_006938.1 + 1226 0.67 0.602167
Target:  5'- -gGACUUCugGccGCCCUGuGGAucGGCu -3'
miRNA:   3'- caCUGAGGugCuuCGGGACcUCU--CCG- -5'
31882 3' -56.8 NC_006938.1 + 7011 0.67 0.591387
Target:  5'- uUGaACUUgGgGAacGGCCCcggcUGGGGAGGCa -3'
miRNA:   3'- cAC-UGAGgUgCU--UCGGG----ACCUCUCCG- -5'
31882 3' -56.8 NC_006938.1 + 26217 0.67 0.591387
Target:  5'- -cGACaUCaACGAAGUCCUGaGAaAGGCg -3'
miRNA:   3'- caCUG-AGgUGCUUCGGGAC-CUcUCCG- -5'
31882 3' -56.8 NC_006938.1 + 44007 0.67 0.590311
Target:  5'- --cGCUCCGCGAuguucaucggucuGGCCUcggcgggaaUGGAGGuGGCa -3'
miRNA:   3'- cacUGAGGUGCU-------------UCGGG---------ACCUCU-CCG- -5'
31882 3' -56.8 NC_006938.1 + 49704 0.67 0.590311
Target:  5'- gGUGAuCUCgGCGAA-CCUUGGAGGcauccucGGCg -3'
miRNA:   3'- -CACU-GAGgUGCUUcGGGACCUCU-------CCG- -5'
31882 3' -56.8 NC_006938.1 + 31644 0.68 0.548677
Target:  5'- -cGACgugugCCACGGAGCCagUGGuGGcuGGCa -3'
miRNA:   3'- caCUGa----GGUGCUUCGGg-ACCuCU--CCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.