miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31882 5' -62.1 NC_006938.1 + 4372 0.66 0.431914
Target:  5'- aCGCGCUCCaCCGGCUcuCCGuucACGuccuccuGGAa -3'
miRNA:   3'- gGCGCGAGG-GGUCGAc-GGC---UGCu------CCU- -5'
31882 5' -62.1 NC_006938.1 + 47018 0.66 0.42293
Target:  5'- aCGaCGCUgCCCugGGCgGCCGAaucuucgaGAGGAc -3'
miRNA:   3'- gGC-GCGAgGGG--UCGaCGGCUg-------CUCCU- -5'
31882 5' -62.1 NC_006938.1 + 36179 0.66 0.414057
Target:  5'- gCCGUagUCUCCGugucGCUGCCaucGACGGGGAc -3'
miRNA:   3'- -GGCGcgAGGGGU----CGACGG---CUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 38985 0.66 0.414057
Target:  5'- cCCGaCGUUCCUCGGUgcggaggugauUGUCGACGAuGGc -3'
miRNA:   3'- -GGC-GCGAGGGGUCG-----------ACGGCUGCU-CCu -5'
31882 5' -62.1 NC_006938.1 + 9901 0.66 0.414057
Target:  5'- gCGCGUUCCC--GCUGUaCGACGAGc- -3'
miRNA:   3'- gGCGCGAGGGguCGACG-GCUGCUCcu -5'
31882 5' -62.1 NC_006938.1 + 43518 0.66 0.405301
Target:  5'- aCCGCGUaugUCCCCGcCU-CCcACGGGGAg -3'
miRNA:   3'- -GGCGCG---AGGGGUcGAcGGcUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 11082 0.67 0.38561
Target:  5'- aCCGUcgcgacaggccaugGCUCCCCAGacccgGCCGAUGuguGGc -3'
miRNA:   3'- -GGCG--------------CGAGGGGUCga---CGGCUGCu--CCu -5'
31882 5' -62.1 NC_006938.1 + 18190 0.67 0.379745
Target:  5'- uCCGCGCggCCggacaCCAGCUgaacGCCGAUGAcgcuguGGAc -3'
miRNA:   3'- -GGCGCGa-GG-----GGUCGA----CGGCUGCU------CCU- -5'
31882 5' -62.1 NC_006938.1 + 51288 0.67 0.371469
Target:  5'- gCGCGUUCCgCCAGCUcGCC-ACGAc-- -3'
miRNA:   3'- gGCGCGAGG-GGUCGA-CGGcUGCUccu -5'
31882 5' -62.1 NC_006938.1 + 30403 0.67 0.371469
Target:  5'- aCGgGCUgaCCCGGCuucgUGCgGACGGGGu -3'
miRNA:   3'- gGCgCGAg-GGGUCG----ACGgCUGCUCCu -5'
31882 5' -62.1 NC_006938.1 + 24746 0.67 0.360895
Target:  5'- cCCGCGUggCCCGGUccauuugaacuucaUGCCGugGccGGGGu -3'
miRNA:   3'- -GGCGCGagGGGUCG--------------ACGGCugC--UCCU- -5'
31882 5' -62.1 NC_006938.1 + 63377 0.68 0.337305
Target:  5'- aCCGCGUgCCaCCAGCUGCuucugucgugccagCGAccgaacacccuCGAGGAc -3'
miRNA:   3'- -GGCGCGaGG-GGUCGACG--------------GCU-----------GCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 44134 0.68 0.331965
Target:  5'- cCCGCGCcagUCCCGGUUGCCaccuccauucccGcCGAGGc -3'
miRNA:   3'- -GGCGCGa--GGGGUCGACGG------------CuGCUCCu -5'
31882 5' -62.1 NC_006938.1 + 51567 0.69 0.275365
Target:  5'- gCCuCGaCUgCCCCGGCUccgGCCGcgACGAGGAu -3'
miRNA:   3'- -GGcGC-GA-GGGGUCGA---CGGC--UGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 17242 0.69 0.268859
Target:  5'- -gGCGaUCUCCAGgucCUGuCCGGCGAGGAc -3'
miRNA:   3'- ggCGCgAGGGGUC---GAC-GGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 26154 0.69 0.268859
Target:  5'- uCCGCGCga-CCAGCUGCC-ACGcagccgguacGGGAu -3'
miRNA:   3'- -GGCGCGaggGGUCGACGGcUGC----------UCCU- -5'
31882 5' -62.1 NC_006938.1 + 29385 0.69 0.266931
Target:  5'- cCUGCGCcugcacuUCCCCGGCgagggacUGaucaaguucaugaCCGACGAGGAc -3'
miRNA:   3'- -GGCGCG-------AGGGGUCG-------AC-------------GGCUGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 14961 0.69 0.260587
Target:  5'- -gGCGCUCaacuCCCGGCucccguugacaaacUGCCGgccACGAGGAu -3'
miRNA:   3'- ggCGCGAG----GGGUCG--------------ACGGC---UGCUCCU- -5'
31882 5' -62.1 NC_006938.1 + 40606 0.71 0.210484
Target:  5'- aUGCGCUCCCCGGa-GCUGGCGGa-- -3'
miRNA:   3'- gGCGCGAGGGGUCgaCGGCUGCUccu -5'
31882 5' -62.1 NC_006938.1 + 61477 0.71 0.200205
Target:  5'- uCUGCGUUCCUaGGCUGaccCCGuCGAGGAa -3'
miRNA:   3'- -GGCGCGAGGGgUCGAC---GGCuGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.