Results 1 - 20 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31895 | 3' | -51.9 | NC_006938.1 | + | 53776 | 1.13 | 0.001598 |
Target: 5'- uGAACUUCGACGCGGAUGCCAACGACCg -3' miRNA: 3'- -CUUGAAGCUGCGCCUACGGUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 40100 | 0.78 | 0.330362 |
Target: 5'- cGAGCUcuuccUCGACGCGGAcagcGCCGgucagccgggugucGCGGCCg -3' miRNA: 3'- -CUUGA-----AGCUGCGCCUa---CGGU--------------UGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 43376 | 0.77 | 0.349322 |
Target: 5'- -uACUUCGAgGUGGAUGCCAgcuucauucGCGAUg -3' miRNA: 3'- cuUGAAGCUgCGCCUACGGU---------UGCUGg -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 29545 | 0.76 | 0.421104 |
Target: 5'- aGGCcgUCGACGCGGGUGUCcgcGAgGGCCu -3' miRNA: 3'- cUUGa-AGCUGCGCCUACGG---UUgCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 52928 | 0.75 | 0.437468 |
Target: 5'- aGAGCUggaaCGugGCGuugcugccguccguGGUGCCAAUGGCCu -3' miRNA: 3'- -CUUGAa---GCugCGC--------------CUACGGUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 38158 | 0.75 | 0.450225 |
Target: 5'- cGGGCUUcuugccacCGACaGUGG-UGCCAGCGGCCu -3' miRNA: 3'- -CUUGAA--------GCUG-CGCCuACGGUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 36 | 0.73 | 0.569542 |
Target: 5'- -cACcgUCGACGCGGAgagUGCCAcugucaacgugaacgGCGACg -3' miRNA: 3'- cuUGa-AGCUGCGCCU---ACGGU---------------UGCUGg -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 51134 | 0.73 | 0.576099 |
Target: 5'- cAGCU--GGCGCGGAuUGCCAuucCGGCCg -3' miRNA: 3'- cUUGAagCUGCGCCU-ACGGUu--GCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 62872 | 0.72 | 0.598064 |
Target: 5'- gGAGCUgcCGAUGCGGAggucuccaguguUGCCAGCcgguguGGCCg -3' miRNA: 3'- -CUUGAa-GCUGCGCCU------------ACGGUUG------CUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 39981 | 0.72 | 0.638952 |
Target: 5'- cGAGCgucuccgUgGugGCGauggaguuggcacuGGUGCCAGCGGCCu -3' miRNA: 3'- -CUUGa------AgCugCGC--------------CUACGGUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 36195 | 0.72 | 0.641165 |
Target: 5'- -cGCUgccaUCGACGgGGAcGCCAucgggucACGACCc -3' miRNA: 3'- cuUGA----AGCUGCgCCUaCGGU-------UGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 62452 | 0.7 | 0.708077 |
Target: 5'- cGGACUccuccaaguUCGGCGUGGAcaacuCCAACGACa -3' miRNA: 3'- -CUUGA---------AGCUGCGCCUac---GGUUGCUGg -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 23649 | 0.7 | 0.728467 |
Target: 5'- cGGACggUGGCGCGGucuaccucGUGCCGAagcagcgcgacguCGGCCa -3' miRNA: 3'- -CUUGaaGCUGCGCC--------UACGGUU-------------GCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 59499 | 0.7 | 0.729531 |
Target: 5'- cGAACcugUCuGGCgcgGCGGAUGCCAGCcucguccgGGCCa -3' miRNA: 3'- -CUUGa--AG-CUG---CGCCUACGGUUG--------CUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 43496 | 0.7 | 0.729531 |
Target: 5'- ----gUgGugGCGGGUGCCcaGGCGACg -3' miRNA: 3'- cuugaAgCugCGCCUACGG--UUGCUGg -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 13859 | 0.69 | 0.760945 |
Target: 5'- aGGGCUUCGACaaGuucauGAUGCUcgacGACGACCu -3' miRNA: 3'- -CUUGAAGCUGcgC-----CUACGG----UUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 57944 | 0.69 | 0.760945 |
Target: 5'- cAGCUUUGugGCGGcgggagagGCCggUGGCUu -3' miRNA: 3'- cUUGAAGCugCGCCua------CGGuuGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 60142 | 0.69 | 0.781241 |
Target: 5'- aGACaggUgGGCGCGGG-GCaGACGACCa -3' miRNA: 3'- cUUGa--AgCUGCGCCUaCGgUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 2980 | 0.69 | 0.781241 |
Target: 5'- cGGACUUCGAgucagguccgGCGGcccGCCAgucGCGACCu -3' miRNA: 3'- -CUUGAAGCUg---------CGCCua-CGGU---UGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 29714 | 0.69 | 0.781241 |
Target: 5'- uGGCUUCuggugccagcgGGCGCGGGUGCa---GGCCg -3' miRNA: 3'- cUUGAAG-----------CUGCGCCUACGguugCUGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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