miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 8274 0.67 0.863605
Target:  5'- aGGGCUUCGAgGgagaccuccCGGugGUCGGCGACCg -3'
miRNA:   3'- -CUUGAAGCUgC---------GCCuaCGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 60142 0.69 0.781241
Target:  5'- aGACaggUgGGCGCGGG-GCaGACGACCa -3'
miRNA:   3'- cUUGa--AgCUGCGCCUaCGgUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 21460 0.69 0.791159
Target:  5'- cGGACcUCGGCGgGGAccacUGCUucaacguCGACCg -3'
miRNA:   3'- -CUUGaAGCUGCgCCU----ACGGuu-----GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 43811 0.69 0.80091
Target:  5'- aGAAC-UCccUGUGGAUGCUcACGGCCg -3'
miRNA:   3'- -CUUGaAGcuGCGCCUACGGuUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 25438 0.68 0.819867
Target:  5'- cGAGCcggUGcACGUGGAgcUGCCGuuCGACCa -3'
miRNA:   3'- -CUUGaa-GC-UGCGCCU--ACGGUu-GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 17618 0.68 0.838027
Target:  5'- aGACgUUCGACGgGGAgcuggucggaGCCAaccucggcuACGACCu -3'
miRNA:   3'- cUUG-AAGCUGCgCCUa---------CGGU---------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 57293 0.68 0.846784
Target:  5'- --uCUUCGAggcCGUGGA-GUCAgACGACCa -3'
miRNA:   3'- cuuGAAGCU---GCGCCUaCGGU-UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 31784 0.68 0.846784
Target:  5'- cGACUUCGgcACGCuGGUGCaggaggcgcaCAACGACUg -3'
miRNA:   3'- cUUGAAGC--UGCGcCUACG----------GUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 15853 0.68 0.855312
Target:  5'- cAugUUCcugGACGagcCGGGUGCCGugGGCUu -3'
miRNA:   3'- cUugAAG---CUGC---GCCUACGGUugCUGG- -5'
31895 3' -51.9 NC_006938.1 + 13859 0.69 0.760945
Target:  5'- aGGGCUUCGACaaGuucauGAUGCUcgacGACGACCu -3'
miRNA:   3'- -CUUGAAGCUGcgC-----CUACGG----UUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 59499 0.7 0.729531
Target:  5'- cGAACcugUCuGGCgcgGCGGAUGCCAGCcucguccgGGCCa -3'
miRNA:   3'- -CUUGa--AG-CUG---CGCCUACGGUUG--------CUGG- -5'
31895 3' -51.9 NC_006938.1 + 43496 0.7 0.729531
Target:  5'- ----gUgGugGCGGGUGCCcaGGCGACg -3'
miRNA:   3'- cuugaAgCugCGCCUACGG--UUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 40100 0.78 0.330362
Target:  5'- cGAGCUcuuccUCGACGCGGAcagcGCCGgucagccgggugucGCGGCCg -3'
miRNA:   3'- -CUUGA-----AGCUGCGCCUa---CGGU--------------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 43376 0.77 0.349322
Target:  5'- -uACUUCGAgGUGGAUGCCAgcuucauucGCGAUg -3'
miRNA:   3'- cuUGAAGCUgCGCCUACGGU---------UGCUGg -5'
31895 3' -51.9 NC_006938.1 + 29545 0.76 0.421104
Target:  5'- aGGCcgUCGACGCGGGUGUCcgcGAgGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCCUACGG---UUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 36 0.73 0.569542
Target:  5'- -cACcgUCGACGCGGAgagUGCCAcugucaacgugaacgGCGACg -3'
miRNA:   3'- cuUGa-AGCUGCGCCU---ACGGU---------------UGCUGg -5'
31895 3' -51.9 NC_006938.1 + 51134 0.73 0.576099
Target:  5'- cAGCU--GGCGCGGAuUGCCAuucCGGCCg -3'
miRNA:   3'- cUUGAagCUGCGCCU-ACGGUu--GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 36195 0.72 0.641165
Target:  5'- -cGCUgccaUCGACGgGGAcGCCAucgggucACGACCc -3'
miRNA:   3'- cuUGA----AGCUGCgCCUaCGGU-------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 62452 0.7 0.708077
Target:  5'- cGGACUccuccaaguUCGGCGUGGAcaacuCCAACGACa -3'
miRNA:   3'- -CUUGA---------AGCUGCGCCUac---GGUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 23649 0.7 0.728467
Target:  5'- cGGACggUGGCGCGGucuaccucGUGCCGAagcagcgcgacguCGGCCa -3'
miRNA:   3'- -CUUGaaGCUGCGCC--------UACGGUU-------------GCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.