miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 36 0.73 0.569542
Target:  5'- -cACcgUCGACGCGGAgagUGCCAcugucaacgugaacgGCGACg -3'
miRNA:   3'- cuUGa-AGCUGCGCCU---ACGGU---------------UGCUGg -5'
31895 3' -51.9 NC_006938.1 + 1575 0.66 0.90128
Target:  5'- -cACcUCGGCGCGGA-GCUGAUGGugucCCg -3'
miRNA:   3'- cuUGaAGCUGCGCCUaCGGUUGCU----GG- -5'
31895 3' -51.9 NC_006938.1 + 2980 0.69 0.781241
Target:  5'- cGGACUUCGAgucagguccgGCGGcccGCCAgucGCGACCu -3'
miRNA:   3'- -CUUGAAGCUg---------CGCCua-CGGU---UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 8274 0.67 0.863605
Target:  5'- aGGGCUUCGAgGgagaccuccCGGugGUCGGCGACCg -3'
miRNA:   3'- -CUUGAAGCUgC---------GCCuaCGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 9515 0.66 0.90128
Target:  5'- ----gUCGAUGaacaGGGUGCCGggcuCGGCCc -3'
miRNA:   3'- cuugaAGCUGCg---CCUACGGUu---GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 10776 0.66 0.926574
Target:  5'- uGAACcaCGGCGCGcuUGCUGACcaGGCCa -3'
miRNA:   3'- -CUUGaaGCUGCGCcuACGGUUG--CUGG- -5'
31895 3' -51.9 NC_006938.1 + 12162 0.68 0.846784
Target:  5'- cGGCggUGACGCGGAucacUGCCAGCuuguucagggcgGACUu -3'
miRNA:   3'- cUUGaaGCUGCGCCU----ACGGUUG------------CUGG- -5'
31895 3' -51.9 NC_006938.1 + 13859 0.69 0.760945
Target:  5'- aGGGCUUCGACaaGuucauGAUGCUcgacGACGACCu -3'
miRNA:   3'- -CUUGAAGCUGcgC-----CUACGG----UUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 15149 0.66 0.90128
Target:  5'- gGGGCggUCGuCGCuccGGA-GCCggUGACCa -3'
miRNA:   3'- -CUUGa-AGCuGCG---CCUaCGGuuGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 15371 0.68 0.838027
Target:  5'- cGAACUucUCGACGaaggcgaGGucGUGUCGAcCGGCCa -3'
miRNA:   3'- -CUUGA--AGCUGCg------CC--UACGGUU-GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 15853 0.68 0.855312
Target:  5'- cAugUUCcugGACGagcCGGGUGCCGugGGCUu -3'
miRNA:   3'- cUugAAG---CUGC---GCCUACGGUugCUGG- -5'
31895 3' -51.9 NC_006938.1 + 16403 0.66 0.920667
Target:  5'- cGAGCUcCGAgccggagaGCGGGUGCUucGCgGGCCa -3'
miRNA:   3'- -CUUGAaGCUg-------CGCCUACGGu-UG-CUGG- -5'
31895 3' -51.9 NC_006938.1 + 17618 0.68 0.838027
Target:  5'- aGACgUUCGACGgGGAgcuggucggaGCCAaccucggcuACGACCu -3'
miRNA:   3'- cUUG-AAGCUGCgCCUa---------CGGU---------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 21460 0.69 0.791159
Target:  5'- cGGACcUCGGCGgGGAccacUGCUucaacguCGACCg -3'
miRNA:   3'- -CUUGaAGCUGCgCCU----ACGGuu-----GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 22923 0.67 0.879452
Target:  5'- -uGCUg-GACcaGCGGAUGCgGACGAUg -3'
miRNA:   3'- cuUGAagCUG--CGCCUACGgUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 23159 0.66 0.920667
Target:  5'- aGACUg-GugGCGGAgGaaAGCGACCc -3'
miRNA:   3'- cUUGAagCugCGCCUaCggUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 23649 0.7 0.728467
Target:  5'- cGGACggUGGCGCGGucuaccucGUGCCGAagcagcgcgacguCGGCCa -3'
miRNA:   3'- -CUUGaaGCUGCGCC--------UACGGUU-------------GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 25438 0.68 0.819867
Target:  5'- cGAGCcggUGcACGUGGAgcUGCCGuuCGACCa -3'
miRNA:   3'- -CUUGaa-GC-UGCGCCU--ACGGUu-GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 29545 0.76 0.421104
Target:  5'- aGGCcgUCGACGCGGGUGUCcgcGAgGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCCUACGG---UUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 29714 0.69 0.781241
Target:  5'- uGGCUUCuggugccagcgGGCGCGGGUGCa---GGCCg -3'
miRNA:   3'- cUUGAAG-----------CUGCGCCUACGguugCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.