miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 30895 0.66 0.90128
Target:  5'- gGAGCUggaGACGCaGGAgGCgGACGgaGCCc -3'
miRNA:   3'- -CUUGAag-CUGCG-CCUaCGgUUGC--UGG- -5'
31895 3' -51.9 NC_006938.1 + 31784 0.68 0.846784
Target:  5'- cGACUUCGgcACGCuGGUGCaggaggcgcaCAACGACUg -3'
miRNA:   3'- cUUGAAGC--UGCGcCUACG----------GUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 33665 0.68 0.829052
Target:  5'- uGAGCcgguggCGGCaCGGuUGCCGACGAaCCg -3'
miRNA:   3'- -CUUGaa----GCUGcGCCuACGGUUGCU-GG- -5'
31895 3' -51.9 NC_006938.1 + 34256 0.67 0.879452
Target:  5'- --uCggCGAgGCGGAgGUCAACGAgCCg -3'
miRNA:   3'- cuuGaaGCUgCGCCUaCGGUUGCU-GG- -5'
31895 3' -51.9 NC_006938.1 + 36195 0.72 0.641165
Target:  5'- -cGCUgccaUCGACGgGGAcGCCAucgggucACGACCc -3'
miRNA:   3'- cuUGA----AGCUGCgCCUaCGGU-------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 38158 0.75 0.450225
Target:  5'- cGGGCUUcuugccacCGACaGUGG-UGCCAGCGGCCu -3'
miRNA:   3'- -CUUGAA--------GCUG-CGCCuACGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 39981 0.72 0.638952
Target:  5'- cGAGCgucuccgUgGugGCGauggaguuggcacuGGUGCCAGCGGCCu -3'
miRNA:   3'- -CUUGa------AgCugCGC--------------CUACGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 40100 0.78 0.330362
Target:  5'- cGAGCUcuuccUCGACGCGGAcagcGCCGgucagccgggugucGCGGCCg -3'
miRNA:   3'- -CUUGA-----AGCUGCGCCUa---CGGU--------------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 40794 0.68 0.846784
Target:  5'- aGAUgaagUCcGCGCGGcggGCCAGCGugCu -3'
miRNA:   3'- cUUGa---AGcUGCGCCua-CGGUUGCugG- -5'
31895 3' -51.9 NC_006938.1 + 41583 0.66 0.906026
Target:  5'- gGAGCggCuGCGCGGcgGCCugggcaaaguccccGACGACg -3'
miRNA:   3'- -CUUGaaGcUGCGCCuaCGG--------------UUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 43376 0.77 0.349322
Target:  5'- -uACUUCGAgGUGGAUGCCAgcuucauucGCGAUg -3'
miRNA:   3'- cuUGAAGCUgCGCCUACGGU---------UGCUGg -5'
31895 3' -51.9 NC_006938.1 + 43496 0.7 0.729531
Target:  5'- ----gUgGugGCGGGUGCCcaGGCGACg -3'
miRNA:   3'- cuugaAgCugCGCCUACGG--UUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 43811 0.69 0.80091
Target:  5'- aGAAC-UCccUGUGGAUGCUcACGGCCg -3'
miRNA:   3'- -CUUGaAGcuGCGCCUACGGuUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 48475 0.67 0.894271
Target:  5'- -cGCcUCGAuCGUGGAgacagUGCCGACGGucuCCg -3'
miRNA:   3'- cuUGaAGCU-GCGCCU-----ACGGUUGCU---GG- -5'
31895 3' -51.9 NC_006938.1 + 50064 0.66 0.904009
Target:  5'- -----cCGGCGCGGGUggcuccacaggucccGCCAACGcucagGCCg -3'
miRNA:   3'- cuugaaGCUGCGCCUA---------------CGGUUGC-----UGG- -5'
31895 3' -51.9 NC_006938.1 + 51134 0.73 0.576099
Target:  5'- cAGCU--GGCGCGGAuUGCCAuucCGGCCg -3'
miRNA:   3'- cUUGAagCUGCGCCU-ACGGUu--GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 52928 0.75 0.437468
Target:  5'- aGAGCUggaaCGugGCGuugcugccguccguGGUGCCAAUGGCCu -3'
miRNA:   3'- -CUUGAa---GCugCGC--------------CUACGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 53776 1.13 0.001598
Target:  5'- uGAACUUCGACGCGGAUGCCAACGACCg -3'
miRNA:   3'- -CUUGAAGCUGCGCCUACGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 55179 0.66 0.918841
Target:  5'- ----gUCGGCGCGGAuacgcggugggguuUGCCGugGucaguCCc -3'
miRNA:   3'- cuugaAGCUGCGCCU--------------ACGGUugCu----GG- -5'
31895 3' -51.9 NC_006938.1 + 55399 0.67 0.879452
Target:  5'- cAGCagUCGGCGCGcucGCCGcagGCGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCcuaCGGU---UGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.