miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 21460 0.69 0.791159
Target:  5'- cGGACcUCGGCGgGGAccacUGCUucaacguCGACCg -3'
miRNA:   3'- -CUUGaAGCUGCgCCU----ACGGuu-----GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 43811 0.69 0.80091
Target:  5'- aGAAC-UCccUGUGGAUGCUcACGGCCg -3'
miRNA:   3'- -CUUGaAGcuGCGCCUACGGuUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 25438 0.68 0.819867
Target:  5'- cGAGCcggUGcACGUGGAgcUGCCGuuCGACCa -3'
miRNA:   3'- -CUUGaa-GC-UGCGCCU--ACGGUu-GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 33665 0.68 0.829052
Target:  5'- uGAGCcgguggCGGCaCGGuUGCCGACGAaCCg -3'
miRNA:   3'- -CUUGaa----GCUGcGCCuACGGUUGCU-GG- -5'
31895 3' -51.9 NC_006938.1 + 15371 0.68 0.838027
Target:  5'- cGAACUucUCGACGaaggcgaGGucGUGUCGAcCGGCCa -3'
miRNA:   3'- -CUUGA--AGCUGCg------CC--UACGGUU-GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 17618 0.68 0.838027
Target:  5'- aGACgUUCGACGgGGAgcuggucggaGCCAaccucggcuACGACCu -3'
miRNA:   3'- cUUG-AAGCUGCgCCUa---------CGGU---------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 57293 0.68 0.846784
Target:  5'- --uCUUCGAggcCGUGGA-GUCAgACGACCa -3'
miRNA:   3'- cuuGAAGCU---GCGCCUaCGGU-UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 31784 0.68 0.846784
Target:  5'- cGACUUCGgcACGCuGGUGCaggaggcgcaCAACGACUg -3'
miRNA:   3'- cUUGAAGC--UGCGcCUACG----------GUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 40794 0.68 0.846784
Target:  5'- aGAUgaagUCcGCGCGGcggGCCAGCGugCu -3'
miRNA:   3'- cUUGa---AGcUGCGCCua-CGGUUGCugG- -5'
31895 3' -51.9 NC_006938.1 + 12162 0.68 0.846784
Target:  5'- cGGCggUGACGCGGAucacUGCCAGCuuguucagggcgGACUu -3'
miRNA:   3'- cUUGaaGCUGCGCCU----ACGGUUG------------CUGG- -5'
31895 3' -51.9 NC_006938.1 + 15853 0.68 0.855312
Target:  5'- cAugUUCcugGACGagcCGGGUGCCGugGGCUu -3'
miRNA:   3'- cUugAAG---CUGC---GCCUACGGUugCUGG- -5'
31895 3' -51.9 NC_006938.1 + 8274 0.67 0.863605
Target:  5'- aGGGCUUCGAgGgagaccuccCGGugGUCGGCGACCg -3'
miRNA:   3'- -CUUGAAGCUgC---------GCCuaCGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 22923 0.67 0.879452
Target:  5'- -uGCUg-GACcaGCGGAUGCgGACGAUg -3'
miRNA:   3'- cuUGAagCUG--CGCCUACGgUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 60326 0.67 0.879452
Target:  5'- gGAACUgUCaGCGCGGcgGCCcucAGCG-CCu -3'
miRNA:   3'- -CUUGA-AGcUGCGCCuaCGG---UUGCuGG- -5'
31895 3' -51.9 NC_006938.1 + 34256 0.67 0.879452
Target:  5'- --uCggCGAgGCGGAgGUCAACGAgCCg -3'
miRNA:   3'- cuuGaaGCUgCGCCUaCGGUUGCU-GG- -5'
31895 3' -51.9 NC_006938.1 + 55399 0.67 0.879452
Target:  5'- cAGCagUCGGCGCGcucGCCGcagGCGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCcuaCGGU---UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 60599 0.67 0.886993
Target:  5'- -cGCUUCGACgGUGGcaacGCCAACuucGCCa -3'
miRNA:   3'- cuUGAAGCUG-CGCCua--CGGUUGc--UGG- -5'
31895 3' -51.9 NC_006938.1 + 61522 0.67 0.886993
Target:  5'- cGAACU-CGAUGCuccGUGUCGAgGGCCg -3'
miRNA:   3'- -CUUGAaGCUGCGcc-UACGGUUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 48475 0.67 0.894271
Target:  5'- -cGCcUCGAuCGUGGAgacagUGCCGACGGucuCCg -3'
miRNA:   3'- cuUGaAGCU-GCGCCU-----ACGGUUGCU---GG- -5'
31895 3' -51.9 NC_006938.1 + 15149 0.66 0.90128
Target:  5'- gGGGCggUCGuCGCuccGGA-GCCggUGACCa -3'
miRNA:   3'- -CUUGa-AGCuGCG---CCUaCGGuuGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.