miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 29545 0.76 0.421104
Target:  5'- aGGCcgUCGACGCGGGUGUCcgcGAgGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCCUACGG---UUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 36 0.73 0.569542
Target:  5'- -cACcgUCGACGCGGAgagUGCCAcugucaacgugaacgGCGACg -3'
miRNA:   3'- cuUGa-AGCUGCGCCU---ACGGU---------------UGCUGg -5'
31895 3' -51.9 NC_006938.1 + 51134 0.73 0.576099
Target:  5'- cAGCU--GGCGCGGAuUGCCAuucCGGCCg -3'
miRNA:   3'- cUUGAagCUGCGCCU-ACGGUu--GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 36195 0.72 0.641165
Target:  5'- -cGCUgccaUCGACGgGGAcGCCAucgggucACGACCc -3'
miRNA:   3'- cuUGA----AGCUGCgCCUaCGGU-------UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 62452 0.7 0.708077
Target:  5'- cGGACUccuccaaguUCGGCGUGGAcaacuCCAACGACa -3'
miRNA:   3'- -CUUGA---------AGCUGCGCCUac---GGUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 23649 0.7 0.728467
Target:  5'- cGGACggUGGCGCGGucuaccucGUGCCGAagcagcgcgacguCGGCCa -3'
miRNA:   3'- -CUUGaaGCUGCGCC--------UACGGUU-------------GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 43811 0.69 0.80091
Target:  5'- aGAAC-UCccUGUGGAUGCUcACGGCCg -3'
miRNA:   3'- -CUUGaAGcuGCGCCUACGGuUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 21460 0.69 0.791159
Target:  5'- cGGACcUCGGCGgGGAccacUGCUucaacguCGACCg -3'
miRNA:   3'- -CUUGaAGCUGCgCCU----ACGGuu-----GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 60142 0.69 0.781241
Target:  5'- aGACaggUgGGCGCGGG-GCaGACGACCa -3'
miRNA:   3'- cUUGa--AgCUGCGCCUaCGgUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 13859 0.69 0.760945
Target:  5'- aGGGCUUCGACaaGuucauGAUGCUcgacGACGACCu -3'
miRNA:   3'- -CUUGAAGCUGcgC-----CUACGG----UUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 59499 0.7 0.729531
Target:  5'- cGAACcugUCuGGCgcgGCGGAUGCCAGCcucguccgGGCCa -3'
miRNA:   3'- -CUUGa--AG-CUG---CGCCUACGGUUG--------CUGG- -5'
31895 3' -51.9 NC_006938.1 + 43496 0.7 0.729531
Target:  5'- ----gUgGugGCGGGUGCCcaGGCGACg -3'
miRNA:   3'- cuugaAgCugCGCCUACGG--UUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 61522 0.67 0.886993
Target:  5'- cGAACU-CGAUGCuccGUGUCGAgGGCCg -3'
miRNA:   3'- -CUUGAaGCUGCGcc-UACGGUUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 48475 0.67 0.894271
Target:  5'- -cGCcUCGAuCGUGGAgacagUGCCGACGGucuCCg -3'
miRNA:   3'- cuUGaAGCU-GCGCCU-----ACGGUUGCU---GG- -5'
31895 3' -51.9 NC_006938.1 + 55558 0.66 0.90128
Target:  5'- ------gGugGCGGGaagagcagugUGCCGACGACg -3'
miRNA:   3'- cuugaagCugCGCCU----------ACGGUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 9515 0.66 0.90128
Target:  5'- ----gUCGAUGaacaGGGUGCCGggcuCGGCCc -3'
miRNA:   3'- cuugaAGCUGCg---CCUACGGUu---GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 30895 0.66 0.90128
Target:  5'- gGAGCUggaGACGCaGGAgGCgGACGgaGCCc -3'
miRNA:   3'- -CUUGAag-CUGCG-CCUaCGgUUGC--UGG- -5'
31895 3' -51.9 NC_006938.1 + 41583 0.66 0.906026
Target:  5'- gGAGCggCuGCGCGGcgGCCugggcaaaguccccGACGACg -3'
miRNA:   3'- -CUUGaaGcUGCGCCuaCGG--------------UUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 55179 0.66 0.918841
Target:  5'- ----gUCGGCGCGGAuacgcggugggguuUGCCGugGucaguCCc -3'
miRNA:   3'- cuugaAGCUGCGCCU--------------ACGGUugCu----GG- -5'
31895 3' -51.9 NC_006938.1 + 52928 0.75 0.437468
Target:  5'- aGAGCUggaaCGugGCGuugcugccguccguGGUGCCAAUGGCCu -3'
miRNA:   3'- -CUUGAa---GCugCGC--------------CUACGGUUGCUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.