Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31895 | 3' | -51.9 | NC_006938.1 | + | 15853 | 0.68 | 0.855312 |
Target: 5'- cAugUUCcugGACGagcCGGGUGCCGugGGCUu -3' miRNA: 3'- cUugAAG---CUGC---GCCUACGGUugCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 12162 | 0.68 | 0.846784 |
Target: 5'- cGGCggUGACGCGGAucacUGCCAGCuuguucagggcgGACUu -3' miRNA: 3'- cUUGaaGCUGCGCCU----ACGGUUG------------CUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 40794 | 0.68 | 0.846784 |
Target: 5'- aGAUgaagUCcGCGCGGcggGCCAGCGugCu -3' miRNA: 3'- cUUGa---AGcUGCGCCua-CGGUUGCugG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 31784 | 0.68 | 0.846784 |
Target: 5'- cGACUUCGgcACGCuGGUGCaggaggcgcaCAACGACUg -3' miRNA: 3'- cUUGAAGC--UGCGcCUACG----------GUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 57293 | 0.68 | 0.846784 |
Target: 5'- --uCUUCGAggcCGUGGA-GUCAgACGACCa -3' miRNA: 3'- cuuGAAGCU---GCGCCUaCGGU-UGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 15371 | 0.68 | 0.838027 |
Target: 5'- cGAACUucUCGACGaaggcgaGGucGUGUCGAcCGGCCa -3' miRNA: 3'- -CUUGA--AGCUGCg------CC--UACGGUU-GCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 17618 | 0.68 | 0.838027 |
Target: 5'- aGACgUUCGACGgGGAgcuggucggaGCCAaccucggcuACGACCu -3' miRNA: 3'- cUUG-AAGCUGCgCCUa---------CGGU---------UGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 33665 | 0.68 | 0.829052 |
Target: 5'- uGAGCcgguggCGGCaCGGuUGCCGACGAaCCg -3' miRNA: 3'- -CUUGaa----GCUGcGCCuACGGUUGCU-GG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 25438 | 0.68 | 0.819867 |
Target: 5'- cGAGCcggUGcACGUGGAgcUGCCGuuCGACCa -3' miRNA: 3'- -CUUGaa-GC-UGCGCCU--ACGGUu-GCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 43811 | 0.69 | 0.80091 |
Target: 5'- aGAAC-UCccUGUGGAUGCUcACGGCCg -3' miRNA: 3'- -CUUGaAGcuGCGCCUACGGuUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 21460 | 0.69 | 0.791159 |
Target: 5'- cGGACcUCGGCGgGGAccacUGCUucaacguCGACCg -3' miRNA: 3'- -CUUGaAGCUGCgCCU----ACGGuu-----GCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 60142 | 0.69 | 0.781241 |
Target: 5'- aGACaggUgGGCGCGGG-GCaGACGACCa -3' miRNA: 3'- cUUGa--AgCUGCGCCUaCGgUUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 2980 | 0.69 | 0.781241 |
Target: 5'- cGGACUUCGAgucagguccgGCGGcccGCCAgucGCGACCu -3' miRNA: 3'- -CUUGAAGCUg---------CGCCua-CGGU---UGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 29714 | 0.69 | 0.781241 |
Target: 5'- uGGCUUCuggugccagcgGGCGCGGGUGCa---GGCCg -3' miRNA: 3'- cUUGAAG-----------CUGCGCCUACGguugCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 13859 | 0.69 | 0.760945 |
Target: 5'- aGGGCUUCGACaaGuucauGAUGCUcgacGACGACCu -3' miRNA: 3'- -CUUGAAGCUGcgC-----CUACGG----UUGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 57944 | 0.69 | 0.760945 |
Target: 5'- cAGCUUUGugGCGGcgggagagGCCggUGGCUu -3' miRNA: 3'- cUUGAAGCugCGCCua------CGGuuGCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 43496 | 0.7 | 0.729531 |
Target: 5'- ----gUgGugGCGGGUGCCcaGGCGACg -3' miRNA: 3'- cuugaAgCugCGCCUACGG--UUGCUGg -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 59499 | 0.7 | 0.729531 |
Target: 5'- cGAACcugUCuGGCgcgGCGGAUGCCAGCcucguccgGGCCa -3' miRNA: 3'- -CUUGa--AG-CUG---CGCCUACGGUUG--------CUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 23649 | 0.7 | 0.728467 |
Target: 5'- cGGACggUGGCGCGGucuaccucGUGCCGAagcagcgcgacguCGGCCa -3' miRNA: 3'- -CUUGaaGCUGCGCC--------UACGGUU-------------GCUGG- -5' |
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31895 | 3' | -51.9 | NC_006938.1 | + | 62452 | 0.7 | 0.708077 |
Target: 5'- cGGACUccuccaaguUCGGCGUGGAcaacuCCAACGACa -3' miRNA: 3'- -CUUGA---------AGCUGCGCCUac---GGUUGCUGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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