miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31895 3' -51.9 NC_006938.1 + 62872 0.72 0.598064
Target:  5'- gGAGCUgcCGAUGCGGAggucuccaguguUGCCAGCcgguguGGCCg -3'
miRNA:   3'- -CUUGAa-GCUGCGCCU------------ACGGUUG------CUGG- -5'
31895 3' -51.9 NC_006938.1 + 62452 0.7 0.708077
Target:  5'- cGGACUccuccaaguUCGGCGUGGAcaacuCCAACGACa -3'
miRNA:   3'- -CUUGA---------AGCUGCGCCUac---GGUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 61522 0.67 0.886993
Target:  5'- cGAACU-CGAUGCuccGUGUCGAgGGCCg -3'
miRNA:   3'- -CUUGAaGCUGCGcc-UACGGUUgCUGG- -5'
31895 3' -51.9 NC_006938.1 + 60599 0.67 0.886993
Target:  5'- -cGCUUCGACgGUGGcaacGCCAACuucGCCa -3'
miRNA:   3'- cuUGAAGCUG-CGCCua--CGGUUGc--UGG- -5'
31895 3' -51.9 NC_006938.1 + 60326 0.67 0.879452
Target:  5'- gGAACUgUCaGCGCGGcgGCCcucAGCG-CCu -3'
miRNA:   3'- -CUUGA-AGcUGCGCCuaCGG---UUGCuGG- -5'
31895 3' -51.9 NC_006938.1 + 60142 0.69 0.781241
Target:  5'- aGACaggUgGGCGCGGG-GCaGACGACCa -3'
miRNA:   3'- cUUGa--AgCUGCGCCUaCGgUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 59499 0.7 0.729531
Target:  5'- cGAACcugUCuGGCgcgGCGGAUGCCAGCcucguccgGGCCa -3'
miRNA:   3'- -CUUGa--AG-CUG---CGCCUACGGUUG--------CUGG- -5'
31895 3' -51.9 NC_006938.1 + 57944 0.69 0.760945
Target:  5'- cAGCUUUGugGCGGcgggagagGCCggUGGCUu -3'
miRNA:   3'- cUUGAAGCugCGCCua------CGGuuGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 57293 0.68 0.846784
Target:  5'- --uCUUCGAggcCGUGGA-GUCAgACGACCa -3'
miRNA:   3'- cuuGAAGCU---GCGCCUaCGGU-UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 57039 0.66 0.914481
Target:  5'- uGACggUGACGCGGAggguuuuauuUGCaugGACGGCUc -3'
miRNA:   3'- cUUGaaGCUGCGCCU----------ACGg--UUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 55558 0.66 0.90128
Target:  5'- ------gGugGCGGGaagagcagugUGCCGACGACg -3'
miRNA:   3'- cuugaagCugCGCCU----------ACGGUUGCUGg -5'
31895 3' -51.9 NC_006938.1 + 55399 0.67 0.879452
Target:  5'- cAGCagUCGGCGCGcucGCCGcagGCGGCCu -3'
miRNA:   3'- cUUGa-AGCUGCGCcuaCGGU---UGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 55179 0.66 0.918841
Target:  5'- ----gUCGGCGCGGAuacgcggugggguuUGCCGugGucaguCCc -3'
miRNA:   3'- cuugaAGCUGCGCCU--------------ACGGUugCu----GG- -5'
31895 3' -51.9 NC_006938.1 + 53776 1.13 0.001598
Target:  5'- uGAACUUCGACGCGGAUGCCAACGACCg -3'
miRNA:   3'- -CUUGAAGCUGCGCCUACGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 52928 0.75 0.437468
Target:  5'- aGAGCUggaaCGugGCGuugcugccguccguGGUGCCAAUGGCCu -3'
miRNA:   3'- -CUUGAa---GCugCGC--------------CUACGGUUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 51134 0.73 0.576099
Target:  5'- cAGCU--GGCGCGGAuUGCCAuucCGGCCg -3'
miRNA:   3'- cUUGAagCUGCGCCU-ACGGUu--GCUGG- -5'
31895 3' -51.9 NC_006938.1 + 50064 0.66 0.904009
Target:  5'- -----cCGGCGCGGGUggcuccacaggucccGCCAACGcucagGCCg -3'
miRNA:   3'- cuugaaGCUGCGCCUA---------------CGGUUGC-----UGG- -5'
31895 3' -51.9 NC_006938.1 + 48475 0.67 0.894271
Target:  5'- -cGCcUCGAuCGUGGAgacagUGCCGACGGucuCCg -3'
miRNA:   3'- cuUGaAGCU-GCGCCU-----ACGGUUGCU---GG- -5'
31895 3' -51.9 NC_006938.1 + 43811 0.69 0.80091
Target:  5'- aGAAC-UCccUGUGGAUGCUcACGGCCg -3'
miRNA:   3'- -CUUGaAGcuGCGCCUACGGuUGCUGG- -5'
31895 3' -51.9 NC_006938.1 + 43496 0.7 0.729531
Target:  5'- ----gUgGugGCGGGUGCCcaGGCGACg -3'
miRNA:   3'- cuugaAgCugCGCCUACGG--UUGCUGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.