miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 32112 0.66 0.976304
Target:  5'- ---cGCCAUCGGaGGCAgGAAgGUGGg -3'
miRNA:   3'- cuucUGGUAGCUgUUGUgCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 28646 0.66 0.976304
Target:  5'- --cGACCA-CGACAcgugGCugGAGCuccgucGCGGc -3'
miRNA:   3'- cuuCUGGUaGCUGU----UGugCUUG------CGCC- -5'
31905 3' -49.8 NC_006938.1 + 39008 0.66 0.976304
Target:  5'- --uGGCCucUGGCAGCGCGcGGCgGCGGa -3'
miRNA:   3'- cuuCUGGuaGCUGUUGUGC-UUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 46353 0.66 0.973496
Target:  5'- -cGGGCCgAUCcaGACGgacuACGCGGACgGCGGu -3'
miRNA:   3'- cuUCUGG-UAG--CUGU----UGUGCUUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 40007 0.66 0.970454
Target:  5'- -uGGACCGUaCGAaguuuuCAGCACGAuCGCa- -3'
miRNA:   3'- cuUCUGGUA-GCU------GUUGUGCUuGCGcc -5'
31905 3' -49.8 NC_006938.1 + 59560 0.66 0.970454
Target:  5'- gGGAGACUucacaAUUGAC-GCGCGGcucagaagcgACGCGGc -3'
miRNA:   3'- -CUUCUGG-----UAGCUGuUGUGCU----------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 46033 0.66 0.970454
Target:  5'- -uGGGCCGagaUUGACAGCACGA---CGGa -3'
miRNA:   3'- cuUCUGGU---AGCUGUUGUGCUugcGCC- -5'
31905 3' -49.8 NC_006938.1 + 61563 0.66 0.970454
Target:  5'- aGAGGACCuccaCGAuCAGCGCGccauagguGugGUGGa -3'
miRNA:   3'- -CUUCUGGua--GCU-GUUGUGC--------UugCGCC- -5'
31905 3' -49.8 NC_006938.1 + 51103 0.66 0.970454
Target:  5'- gGAAGGCgAUCGuggcgauCAGCACGcg-GCGGu -3'
miRNA:   3'- -CUUCUGgUAGCu------GUUGUGCuugCGCC- -5'
31905 3' -49.8 NC_006938.1 + 21266 0.66 0.96717
Target:  5'- --cGAcCCGUCGcuguuCGACGCGGA-GCGGa -3'
miRNA:   3'- cuuCU-GGUAGCu----GUUGUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 26065 0.66 0.96717
Target:  5'- --cGGCUgcgUGGCAGCugGucGCGCGGa -3'
miRNA:   3'- cuuCUGGua-GCUGUUGugCu-UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 11506 0.66 0.96717
Target:  5'- cGAAGu---UgGACAGCGCGGacgACGCGGc -3'
miRNA:   3'- -CUUCugguAgCUGUUGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 4549 0.66 0.96717
Target:  5'- gGAGGcACCGUCGuCGGCcACGAggauugaggcaGCGCGc -3'
miRNA:   3'- -CUUC-UGGUAGCuGUUG-UGCU-----------UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 23535 0.66 0.96717
Target:  5'- -cAGGCCAcUUGGCAAUGCGAuCGUGc -3'
miRNA:   3'- cuUCUGGU-AGCUGUUGUGCUuGCGCc -5'
31905 3' -49.8 NC_006938.1 + 17729 0.66 0.96717
Target:  5'- cAAGAcaaccgucucuCCAUCGGCGggcuGCGCGGagaACGUGGc -3'
miRNA:   3'- cUUCU-----------GGUAGCUGU----UGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 51559 0.66 0.96717
Target:  5'- ---cGCCAUCGAgGGCGCGGuC-CGGg -3'
miRNA:   3'- cuucUGGUAGCUgUUGUGCUuGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 6582 0.66 0.96717
Target:  5'- -cAGACCGUCG-CugucaACGGACGCa- -3'
miRNA:   3'- cuUCUGGUAGCuGuug--UGCUUGCGcc -5'
31905 3' -49.8 NC_006938.1 + 12172 0.66 0.966828
Target:  5'- --cGGCCAcacgcucUCGAacuGCugGAGCgGCGGg -3'
miRNA:   3'- cuuCUGGU-------AGCUgu-UGugCUUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 24312 0.66 0.966483
Target:  5'- cGAGGugC-UCGACGGCcgcauccuggaGGACGUGGa -3'
miRNA:   3'- -CUUCugGuAGCUGUUGug---------CUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 25064 0.66 0.963268
Target:  5'- aGAcGACCA-CGGCAACugGGucaagucAgGCGGc -3'
miRNA:   3'- -CUuCUGGUaGCUGUUGugCU-------UgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.