miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 48378 0.77 0.505291
Target:  5'- cGGAGACCGUCGGCAcugucucCACGAucgAgGCGGc -3'
miRNA:   3'- -CUUCUGGUAGCUGUu------GUGCU---UgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 48111 0.69 0.892768
Target:  5'- cGAGGCCAgCGGCccacaucuGCACGAcgACGCGa -3'
miRNA:   3'- cUUCUGGUaGCUGu-------UGUGCU--UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 48031 0.68 0.913346
Target:  5'- cAAGACC-UCgGGCGGCGCGGACgGCa- -3'
miRNA:   3'- cUUCUGGuAG-CUGUUGUGCUUG-CGcc -5'
31905 3' -49.8 NC_006938.1 + 46353 0.66 0.973496
Target:  5'- -cGGGCCgAUCcaGACGgacuACGCGGACgGCGGu -3'
miRNA:   3'- cuUCUGG-UAG--CUGU----UGUGCUUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 46255 0.72 0.777808
Target:  5'- -cAGGCCA-CGGCGgaguACGCGGugcGCGCGGu -3'
miRNA:   3'- cuUCUGGUaGCUGU----UGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 46033 0.66 0.970454
Target:  5'- -uGGGCCGagaUUGACAGCACGA---CGGa -3'
miRNA:   3'- cuUCUGGU---AGCUGUUGUGCUugcGCC- -5'
31905 3' -49.8 NC_006938.1 + 41891 0.67 0.941987
Target:  5'- cGGGGCagguugccCGACAGCugGAccgcGCGCGGc -3'
miRNA:   3'- cUUCUGgua-----GCUGUUGugCU----UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 40679 0.68 0.919644
Target:  5'- aGAAuGCCAUCGAgaacaagauCAGCACGcuggcccgccGCGCGGa -3'
miRNA:   3'- -CUUcUGGUAGCU---------GUUGUGCu---------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 40548 0.69 0.877682
Target:  5'- cGAGuCCAUUGACGAUcugACGGACGaGGa -3'
miRNA:   3'- cUUCuGGUAGCUGUUG---UGCUUGCgCC- -5'
31905 3' -49.8 NC_006938.1 + 40007 0.66 0.970454
Target:  5'- -uGGACCGUaCGAaguuuuCAGCACGAuCGCa- -3'
miRNA:   3'- cuUCUGGUA-GCU------GUUGUGCUuGCGcc -5'
31905 3' -49.8 NC_006938.1 + 39572 0.67 0.946865
Target:  5'- --cGGCCGUCGACuuCuCGGACGaCGu -3'
miRNA:   3'- cuuCUGGUAGCUGuuGuGCUUGC-GCc -5'
31905 3' -49.8 NC_006938.1 + 39008 0.66 0.976304
Target:  5'- --uGGCCucUGGCAGCGCGcGGCgGCGGa -3'
miRNA:   3'- cuuCUGGuaGCUGUUGUGC-UUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 38662 0.69 0.877682
Target:  5'- uGAGGAucccgcugacuCCAUCG-CGACACGGGuCGCGu -3'
miRNA:   3'- -CUUCU-----------GGUAGCuGUUGUGCUU-GCGCc -5'
31905 3' -49.8 NC_006938.1 + 38446 0.67 0.941987
Target:  5'- --cGACC-UCGACAACGacgaagaGAACGUGu -3'
miRNA:   3'- cuuCUGGuAGCUGUUGUg------CUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 34970 0.67 0.951464
Target:  5'- cGAGACCAUCcACAuguggcuccagaACAUGGACGUcacGGa -3'
miRNA:   3'- cUUCUGGUAGcUGU------------UGUGCUUGCG---CC- -5'
31905 3' -49.8 NC_006938.1 + 34889 0.7 0.835527
Target:  5'- -uGGACUucGUCGACAACACGuuCGCc- -3'
miRNA:   3'- cuUCUGG--UAGCUGUUGUGCuuGCGcc -5'
31905 3' -49.8 NC_006938.1 + 34113 0.69 0.892768
Target:  5'- cGAGGCCAUCauCAACugGGACaaGGg -3'
miRNA:   3'- cUUCUGGUAGcuGUUGugCUUGcgCC- -5'
31905 3' -49.8 NC_006938.1 + 33533 0.69 0.885359
Target:  5'- uGAAGACCAcgUCGGCGACGagaccaGAuacCGCGu -3'
miRNA:   3'- -CUUCUGGU--AGCUGUUGUg-----CUu--GCGCc -5'
31905 3' -49.8 NC_006938.1 + 33113 0.71 0.822688
Target:  5'- cGAGGGCCucaagaugcuggcgGUCGACAucgccaagggcauACGCGAGCG-GGa -3'
miRNA:   3'- -CUUCUGG--------------UAGCUGU-------------UGUGCUUGCgCC- -5'
31905 3' -49.8 NC_006938.1 + 32112 0.66 0.976304
Target:  5'- ---cGCCAUCGGaGGCAgGAAgGUGGg -3'
miRNA:   3'- cuucUGGUAGCUgUUGUgCUUgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.