miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31911 3' -55.1 NC_006938.1 + 54089 0.66 0.766207
Target:  5'- -cGGCGAUGGuCUCGCaGUACUUGa- -3'
miRNA:   3'- uuCUGCUACUuGAGCGcCGUGGACgg -5'
31911 3' -55.1 NC_006938.1 + 18968 0.66 0.766207
Target:  5'- gGAGACGAcggacUGAACUacUGgGGCACCcacaagGCa -3'
miRNA:   3'- -UUCUGCU-----ACUUGA--GCgCCGUGGa-----CGg -5'
31911 3' -55.1 NC_006938.1 + 14315 0.66 0.765192
Target:  5'- -uGGCGAUGAGCgccuucuuggcaaUCGCGGCGCg---- -3'
miRNA:   3'- uuCUGCUACUUG-------------AGCGCCGUGgacgg -5'
31911 3' -55.1 NC_006938.1 + 14082 0.66 0.755988
Target:  5'- gAAGACGGUGucgUCGaCGGCGgccgacuggauCUUGCCg -3'
miRNA:   3'- -UUCUGCUACuugAGC-GCCGU-----------GGACGG- -5'
31911 3' -55.1 NC_006938.1 + 46977 0.66 0.755988
Target:  5'- -cGACGAgUGGGCgCGCGuCACCgugcGCCa -3'
miRNA:   3'- uuCUGCU-ACUUGaGCGCcGUGGa---CGG- -5'
31911 3' -55.1 NC_006938.1 + 43200 0.66 0.745642
Target:  5'- -cGGCG-UGucCUCGCGG-ACCgGCCa -3'
miRNA:   3'- uuCUGCuACuuGAGCGCCgUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 54397 0.66 0.745642
Target:  5'- -cGGCGGUGGccagaGCUgGCGacGCACUUGCa -3'
miRNA:   3'- uuCUGCUACU-----UGAgCGC--CGUGGACGg -5'
31911 3' -55.1 NC_006938.1 + 56444 0.66 0.745642
Target:  5'- cGGACG--GAGCUCGUGGaGCUUGaCCu -3'
miRNA:   3'- uUCUGCuaCUUGAGCGCCgUGGAC-GG- -5'
31911 3' -55.1 NC_006938.1 + 62982 0.66 0.745642
Target:  5'- cAGGCG--GAGcCUCuCGGCACCgGCCu -3'
miRNA:   3'- uUCUGCuaCUU-GAGcGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 58910 0.66 0.745642
Target:  5'- --aACGGUGAGCUugaCGCGGCcaucaCUGCg -3'
miRNA:   3'- uucUGCUACUUGA---GCGCCGug---GACGg -5'
31911 3' -55.1 NC_006938.1 + 23649 0.66 0.713963
Target:  5'- cGGACGGUGg---CGCGGUcuACCUcguGCCg -3'
miRNA:   3'- uUCUGCUACuugaGCGCCG--UGGA---CGG- -5'
31911 3' -55.1 NC_006938.1 + 57119 0.66 0.713963
Target:  5'- uGGucuCGAUGAGCUCGU---GCUUGCCa -3'
miRNA:   3'- uUCu--GCUACUUGAGCGccgUGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 61411 0.66 0.713963
Target:  5'- cAGACcAUGucggCGUGGCACCgGCCc -3'
miRNA:   3'- uUCUGcUACuugaGCGCCGUGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 21648 0.67 0.703227
Target:  5'- cAGGGCGAcgUGGGCcgcgCGCGGguCCaGCUg -3'
miRNA:   3'- -UUCUGCU--ACUUGa---GCGCCguGGaCGG- -5'
31911 3' -55.1 NC_006938.1 + 18830 0.67 0.702149
Target:  5'- -cGACGA-GGGCgCGCGGCugUuugagacauuccaUGCCa -3'
miRNA:   3'- uuCUGCUaCUUGaGCGCCGugG-------------ACGG- -5'
31911 3' -55.1 NC_006938.1 + 51499 0.67 0.670649
Target:  5'- cGAGGCGAUcGucGCcgCGUGGaacaACCUGCCc -3'
miRNA:   3'- -UUCUGCUA-Cu-UGa-GCGCCg---UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 33041 0.67 0.659702
Target:  5'- cAGGugGAgGAGCUccgucCGUGGCgACCUGUa -3'
miRNA:   3'- -UUCugCUaCUUGA-----GCGCCG-UGGACGg -5'
31911 3' -55.1 NC_006938.1 + 46181 0.69 0.582924
Target:  5'- gGGGAgGGUGGACaUGUcuGGCGgCUGCCa -3'
miRNA:   3'- -UUCUgCUACUUGaGCG--CCGUgGACGG- -5'
31911 3' -55.1 NC_006938.1 + 2754 0.69 0.581835
Target:  5'- uGGACGggGucuACUcggcgggauccugCGCGGUcgACCUGCCa -3'
miRNA:   3'- uUCUGCuaCu--UGA-------------GCGCCG--UGGACGG- -5'
31911 3' -55.1 NC_006938.1 + 24444 0.69 0.572048
Target:  5'- uGGGAC-AUGGGCUucggccCGUGGCACC-GCCu -3'
miRNA:   3'- -UUCUGcUACUUGA------GCGCCGUGGaCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.