miRNA display CGI


Results 1 - 20 of 81 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32068 3' -57.6 NC_007016.1 + 92461 0.66 0.787777
Target:  5'- gGCCgacGGUGAGCAGGCCgaGGUAuGUcuGGCc -3'
miRNA:   3'- -CGG---UCGUUCGUCCGG--UCGUuCGu-CCG- -5'
32068 3' -57.6 NC_007016.1 + 125269 0.66 0.787777
Target:  5'- cCCAGguGGCugaugguagAGGCgGGUucGUGGGCg -3'
miRNA:   3'- cGGUCguUCG---------UCCGgUCGuuCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 12925 0.66 0.787777
Target:  5'- cGCCGGCAuGCA--CCAGCuacaacaggaaGAGCguAGGCg -3'
miRNA:   3'- -CGGUCGUuCGUccGGUCG-----------UUCG--UCCG- -5'
32068 3' -57.6 NC_007016.1 + 130137 0.66 0.787777
Target:  5'- aGCCGG--GGgAGGCCGGCGGcGCcccgcucggGGGCc -3'
miRNA:   3'- -CGGUCguUCgUCCGGUCGUU-CG---------UCCG- -5'
32068 3' -57.6 NC_007016.1 + 8607 0.66 0.778382
Target:  5'- cGCCGGCGcuaggggucgguAGCuguuccucgggGGGCUGGCAggaAGCGguGGCg -3'
miRNA:   3'- -CGGUCGU------------UCG-----------UCCGGUCGU---UCGU--CCG- -5'
32068 3' -57.6 NC_007016.1 + 56347 0.66 0.777435
Target:  5'- uGCCA-CAAuuuuuacGUGGGCCgcGGCGAGUGGGUa -3'
miRNA:   3'- -CGGUcGUU-------CGUCCGG--UCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 82882 0.66 0.768852
Target:  5'- cCCAaCcuGCAGGCCucucuGCGcgcAGUAGGCg -3'
miRNA:   3'- cGGUcGuuCGUCCGGu----CGU---UCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 1148 0.66 0.768852
Target:  5'- -gCGGCAGGCAGGCgguuuuauugUAGCGgauGGguGGg -3'
miRNA:   3'- cgGUCGUUCGUCCG----------GUCGU---UCguCCg -5'
32068 3' -57.6 NC_007016.1 + 40953 0.66 0.768852
Target:  5'- aCCGGCAcGCgcuGGGCCGGCA-GCc-GCg -3'
miRNA:   3'- cGGUCGUuCG---UCCGGUCGUuCGucCG- -5'
32068 3' -57.6 NC_007016.1 + 123491 0.66 0.76693
Target:  5'- cGUCAGUucgcuguuucuGCAGacGUCGGCGAGguGGCc -3'
miRNA:   3'- -CGGUCGuu---------CGUC--CGGUCGUUCguCCG- -5'
32068 3' -57.6 NC_007016.1 + 130332 0.66 0.759195
Target:  5'- cGCCGGgAGGgGGGCUggggcccggGGCGccucGGCGGGg -3'
miRNA:   3'- -CGGUCgUUCgUCCGG---------UCGU----UCGUCCg -5'
32068 3' -57.6 NC_007016.1 + 116137 0.66 0.749421
Target:  5'- gGCCgGGCAG--AGGCCGGCcGGCcaaAGGUg -3'
miRNA:   3'- -CGG-UCGUUcgUCCGGUCGuUCG---UCCG- -5'
32068 3' -57.6 NC_007016.1 + 39982 0.66 0.749421
Target:  5'- gGCCA-CGAGguGGUgGGac-GCAGGCc -3'
miRNA:   3'- -CGGUcGUUCguCCGgUCguuCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 131032 0.67 0.739541
Target:  5'- cUCAGCA-GCA----AGCAAGCAGGCa -3'
miRNA:   3'- cGGUCGUuCGUccggUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 645 0.67 0.739541
Target:  5'- cUCAGCA-GCA----AGCAAGCAGGCa -3'
miRNA:   3'- cGGUCGUuCGUccggUCGUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 48701 0.67 0.729563
Target:  5'- uCCGGCAGGCgaaugaGGGCCcacgguuGCgAAGUGGGUa -3'
miRNA:   3'- cGGUCGUUCG------UCCGGu------CG-UUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 82114 0.67 0.729563
Target:  5'- uGCaCGGCGcauGGCucucuGGuaCCGGgGAGCGGGCa -3'
miRNA:   3'- -CG-GUCGU---UCGu----CC--GGUCgUUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 10330 0.67 0.727556
Target:  5'- gGCCAGCAcgacguuGGCgGGGCCGGgAAagagaucGCucuGGCg -3'
miRNA:   3'- -CGGUCGU-------UCG-UCCGGUCgUU-------CGu--CCG- -5'
32068 3' -57.6 NC_007016.1 + 16111 0.67 0.719498
Target:  5'- cGCCAGCuucuGGUAcaccGCCAGgugGGGCAGGUu -3'
miRNA:   3'- -CGGUCGu---UCGUc---CGGUCg--UUCGUCCG- -5'
32068 3' -57.6 NC_007016.1 + 105462 0.67 0.719498
Target:  5'- uGCUGGCGugugcggguuuGGCGGGCuCGGUGAGCacucgGGGUu -3'
miRNA:   3'- -CGGUCGU-----------UCGUCCG-GUCGUUCG-----UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.