miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32078 3' -55.4 NC_007016.1 + 68085 0.66 0.900315
Target:  5'- cUGCCGagacgUGCCgGCAACUGGGGaacAUGCg- -3'
miRNA:   3'- -ACGGU-----GCGGgCGUUGAUCUU---UGCGgu -5'
32078 3' -55.4 NC_007016.1 + 98930 0.66 0.893651
Target:  5'- gGCCAaaguacuCCUGCGAUUGGAagAugGCCGc -3'
miRNA:   3'- aCGGUgc-----GGGCGUUGAUCU--UugCGGU- -5'
32078 3' -55.4 NC_007016.1 + 59283 0.66 0.893651
Target:  5'- aGgCGCGCCCcCGACgguGAAAcgauCGCCAg -3'
miRNA:   3'- aCgGUGCGGGcGUUGau-CUUU----GCGGU- -5'
32078 3' -55.4 NC_007016.1 + 104415 0.66 0.893651
Target:  5'- cGgCACGCCCaGCGcCUGGGccaGGCGCgCGg -3'
miRNA:   3'- aCgGUGCGGG-CGUuGAUCU---UUGCG-GU- -5'
32078 3' -55.4 NC_007016.1 + 119942 0.66 0.891605
Target:  5'- gGCCGCGCaCGCAuugaccguuaggugGCgcaGAGCGCCGu -3'
miRNA:   3'- aCGGUGCGgGCGU--------------UGaucUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 20719 0.66 0.880334
Target:  5'- gGgCACGCgCCGCGGCaaccucggauccgcgAGAAACGCg- -3'
miRNA:   3'- aCgGUGCG-GGCGUUGa--------------UCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 17395 0.66 0.87961
Target:  5'- cGCCGCGCCCugccccgugguGCGAgUAagcuccgccgacGAcGCGCCGc -3'
miRNA:   3'- aCGGUGCGGG-----------CGUUgAU------------CUuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 103894 0.66 0.87961
Target:  5'- cUGCCGCaCCUGacGCUAGAGGC-CCAg -3'
miRNA:   3'- -ACGGUGcGGGCguUGAUCUUUGcGGU- -5'
32078 3' -55.4 NC_007016.1 + 67935 0.66 0.87961
Target:  5'- uUGCCggcACGUCUcgGCAGgUGGAAGCGuCCGc -3'
miRNA:   3'- -ACGG---UGCGGG--CGUUgAUCUUUGC-GGU- -5'
32078 3' -55.4 NC_007016.1 + 18210 0.66 0.87961
Target:  5'- cUGCaCGCGUCCGuCAGCgcuaucGGAACGCg- -3'
miRNA:   3'- -ACG-GUGCGGGC-GUUGau----CUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 111419 0.66 0.872241
Target:  5'- gGCCACgGCCuCGCAgaugcuauuaACUGGAAcCGUUAc -3'
miRNA:   3'- aCGGUG-CGG-GCGU----------UGAUCUUuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 106800 0.66 0.872241
Target:  5'- gGCgagCACGCaCCGUAAaUAGGGAuCGCCAa -3'
miRNA:   3'- aCG---GUGCG-GGCGUUgAUCUUU-GCGGU- -5'
32078 3' -55.4 NC_007016.1 + 103269 0.66 0.872241
Target:  5'- cGgCGCGCCuCGCGA-UGGAcucgAugGCCAg -3'
miRNA:   3'- aCgGUGCGG-GCGUUgAUCU----UugCGGU- -5'
32078 3' -55.4 NC_007016.1 + 25870 0.66 0.872241
Target:  5'- gUGCUACGgggUCGCGGCUGGucuucuGGCGCUAg -3'
miRNA:   3'- -ACGGUGCg--GGCGUUGAUCu-----UUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116379 0.66 0.872241
Target:  5'- gGCCguaugACGaccCCCGCAACgcGAAGgGCCGc -3'
miRNA:   3'- aCGG-----UGC---GGGCGUUGauCUUUgCGGU- -5'
32078 3' -55.4 NC_007016.1 + 103043 0.66 0.864647
Target:  5'- -aCCAuCGCCguuCGCGAuCUAGGAACGCUc -3'
miRNA:   3'- acGGU-GCGG---GCGUU-GAUCUUUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 117658 0.66 0.864647
Target:  5'- cGCCGCuGCgCCGCcuCUGGAcaaauuggcgGAgGCCAu -3'
miRNA:   3'- aCGGUG-CG-GGCGuuGAUCU----------UUgCGGU- -5'
32078 3' -55.4 NC_007016.1 + 63149 0.66 0.864647
Target:  5'- gGCCGCGUgagCgGCAGCUAGggGagacggauggcgUGCCu -3'
miRNA:   3'- aCGGUGCG---GgCGUUGAUCuuU------------GCGGu -5'
32078 3' -55.4 NC_007016.1 + 96719 0.66 0.863875
Target:  5'- gGCCAgGCUCGCgAGCUguggacuauccaaAGAAGCGUg- -3'
miRNA:   3'- aCGGUgCGGGCG-UUGA-------------UCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 7715 0.67 0.856833
Target:  5'- uUGCCuuACGCCgGUguuacaAACUAucGACGCCGa -3'
miRNA:   3'- -ACGG--UGCGGgCG------UUGAUcuUUGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.