miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32078 3' -55.4 NC_007016.1 + 130375 0.76 0.349493
Target:  5'- aGCCGCGCgCCGCGGCUuguGggGCcCCGg -3'
miRNA:   3'- aCGGUGCG-GGCGUUGAu--CuuUGcGGU- -5'
32078 3' -55.4 NC_007016.1 + 130229 0.68 0.787308
Target:  5'- aGCCGCGgCgCGCGGCUcccGAUGCCGg -3'
miRNA:   3'- aCGGUGCgG-GCGUUGAucuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 130139 0.74 0.48264
Target:  5'- cGCCGgGcCCCGcCGACUcccGGGAGCGCCc -3'
miRNA:   3'- aCGGUgC-GGGC-GUUGA---UCUUUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 130015 0.73 0.532244
Target:  5'- cGCCGgGCgCCGCcGCUAGGggcccucgccuGGCGCCGc -3'
miRNA:   3'- aCGGUgCG-GGCGuUGAUCU-----------UUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 119942 0.66 0.891605
Target:  5'- gGCCGCGCaCGCAuugaccguuaggugGCgcaGAGCGCCGu -3'
miRNA:   3'- aCGGUGCGgGCGU--------------UGaucUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 119664 0.72 0.562877
Target:  5'- cGCCACGCCCccuaccGCGACU----GCGCCc -3'
miRNA:   3'- aCGGUGCGGG------CGUUGAucuuUGCGGu -5'
32078 3' -55.4 NC_007016.1 + 117658 0.66 0.864647
Target:  5'- cGCCGCuGCgCCGCcuCUGGAcaaauuggcgGAgGCCAu -3'
miRNA:   3'- aCGGUG-CG-GGCGuuGAUCU----------UUgCGGU- -5'
32078 3' -55.4 NC_007016.1 + 117456 0.69 0.7288
Target:  5'- gGCCGCGgCCGUGaggguuGCggccGAAACGCCGa -3'
miRNA:   3'- aCGGUGCgGGCGU------UGau--CUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116831 0.71 0.62531
Target:  5'- gGCCACG-UCGCGuCUGGAGACgGCCu -3'
miRNA:   3'- aCGGUGCgGGCGUuGAUCUUUG-CGGu -5'
32078 3' -55.4 NC_007016.1 + 116591 0.69 0.747769
Target:  5'- aGCCGCGCCgcuuggcggCGCGGCcgguucUGGGAaauguccGCGCCAg -3'
miRNA:   3'- aCGGUGCGG---------GCGUUG------AUCUU-------UGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116379 0.66 0.872241
Target:  5'- gGCCguaugACGaccCCCGCAACgcGAAGgGCCGc -3'
miRNA:   3'- aCGG-----UGC---GGGCGUUGauCUUUgCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116053 0.67 0.823525
Target:  5'- -cCCGCGCCCGCggUgccau-CGCCGg -3'
miRNA:   3'- acGGUGCGGGCGuuGaucuuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 115794 0.75 0.399554
Target:  5'- cGCCACcauguGCCCGCAAUUuGggGCGCgGg -3'
miRNA:   3'- aCGGUG-----CGGGCGUUGAuCuuUGCGgU- -5'
32078 3' -55.4 NC_007016.1 + 111419 0.66 0.872241
Target:  5'- gGCCACgGCCuCGCAgaugcuauuaACUGGAAcCGUUAc -3'
miRNA:   3'- aCGGUG-CGG-GCGU----------UGAUCUUuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 106800 0.66 0.872241
Target:  5'- gGCgagCACGCaCCGUAAaUAGGGAuCGCCAa -3'
miRNA:   3'- aCG---GUGCG-GGCGUUgAUCUUU-GCGGU- -5'
32078 3' -55.4 NC_007016.1 + 104571 0.71 0.604393
Target:  5'- cGCCugGCCCagGC-GCUGGGcgUGCCGc -3'
miRNA:   3'- aCGGugCGGG--CGuUGAUCUuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 104415 0.66 0.893651
Target:  5'- cGgCACGCCCaGCGcCUGGGccaGGCGCgCGg -3'
miRNA:   3'- aCgGUGCGGG-CGUuGAUCU---UUGCG-GU- -5'
32078 3' -55.4 NC_007016.1 + 103894 0.66 0.87961
Target:  5'- cUGCCGCaCCUGacGCUAGAGGC-CCAg -3'
miRNA:   3'- -ACGGUGcGGGCguUGAUCUUUGcGGU- -5'
32078 3' -55.4 NC_007016.1 + 103269 0.66 0.872241
Target:  5'- cGgCGCGCCuCGCGA-UGGAcucgAugGCCAg -3'
miRNA:   3'- aCgGUGCGG-GCGUUgAUCU----UugCGGU- -5'
32078 3' -55.4 NC_007016.1 + 103043 0.66 0.864647
Target:  5'- -aCCAuCGCCguuCGCGAuCUAGGAACGCUc -3'
miRNA:   3'- acGGU-GCGG---GCGUU-GAUCUUUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.