miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32078 3' -55.4 NC_007016.1 + 17407 1.09 0.002486
Target:  5'- gUGCCACGCCCGCAACUAGAAACGCCAg -3'
miRNA:   3'- -ACGGUGCGGGCGUUGAUCUUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 117658 0.66 0.864647
Target:  5'- cGCCGCuGCgCCGCcuCUGGAcaaauuggcgGAgGCCAu -3'
miRNA:   3'- aCGGUG-CG-GGCGuuGAUCU----------UUgCGGU- -5'
32078 3' -55.4 NC_007016.1 + 18210 0.66 0.87961
Target:  5'- cUGCaCGCGUCCGuCAGCgcuaucGGAACGCg- -3'
miRNA:   3'- -ACG-GUGCGGGC-GUUGau----CUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 68085 0.66 0.900315
Target:  5'- cUGCCGagacgUGCCgGCAACUGGGGaacAUGCg- -3'
miRNA:   3'- -ACGGU-----GCGGgCGUUGAUCUU---UGCGgu -5'
32078 3' -55.4 NC_007016.1 + 130015 0.73 0.532244
Target:  5'- cGCCGgGCgCCGCcGCUAGGggcccucgccuGGCGCCGc -3'
miRNA:   3'- aCGGUgCG-GGCGuUGAUCU-----------UUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 104571 0.71 0.604393
Target:  5'- cGCCugGCCCagGC-GCUGGGcgUGCCGc -3'
miRNA:   3'- aCGGugCGGG--CGuUGAUCUuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 19792 0.7 0.708492
Target:  5'- gGCCGcCGCCCGCGAUUGuGAGCGa-- -3'
miRNA:   3'- aCGGU-GCGGGCGUUGAUcUUUGCggu -5'
32078 3' -55.4 NC_007016.1 + 96401 0.69 0.738827
Target:  5'- aGCCACGUCUGaAGC-GGAGACGCg- -3'
miRNA:   3'- aCGGUGCGGGCgUUGaUCUUUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 67488 0.68 0.796605
Target:  5'- aGCCAUGauaggucuCCUGCAACauaugAGAcGACGCCAc -3'
miRNA:   3'- aCGGUGC--------GGGCGUUGa----UCU-UUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 9919 0.67 0.856833
Target:  5'- cGCCGCgacgguggcgGUCCGUGGCUccgagGGGGugGCCGg -3'
miRNA:   3'- aCGGUG----------CGGGCGUUGA-----UCUUugCGGU- -5'
32078 3' -55.4 NC_007016.1 + 116053 0.67 0.823525
Target:  5'- -cCCGCGCCCGCggUgccau-CGCCGg -3'
miRNA:   3'- acGGUGCGGGCGuuGaucuuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 22064 0.68 0.768287
Target:  5'- aGaCACGCCCGUuuuggGACUcGcGACGCCAc -3'
miRNA:   3'- aCgGUGCGGGCG-----UUGAuCuUUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 130375 0.76 0.349493
Target:  5'- aGCCGCGCgCCGCGGCUuguGggGCcCCGg -3'
miRNA:   3'- aCGGUGCG-GGCGUUGAu--CuuUGcGGU- -5'
32078 3' -55.4 NC_007016.1 + 26063 0.67 0.839741
Target:  5'- cGCCuauCGCCugauggcaaacagCGCAACUA---GCGCCAg -3'
miRNA:   3'- aCGGu--GCGG-------------GCGUUGAUcuuUGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 10778 0.76 0.365674
Target:  5'- -cCCACGCCCGCAGC-AGAcGACGCg- -3'
miRNA:   3'- acGGUGCGGGCGUUGaUCU-UUGCGgu -5'
32078 3' -55.4 NC_007016.1 + 116591 0.69 0.747769
Target:  5'- aGCCGCGCCgcuuggcggCGCGGCcgguucUGGGAaauguccGCGCCAg -3'
miRNA:   3'- aCGGUGCGG---------GCGUUG------AUCUU-------UGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 16731 0.67 0.848807
Target:  5'- cGCCGCGUCCGCGuCgc----CGCCGg -3'
miRNA:   3'- aCGGUGCGGGCGUuGaucuuuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 111419 0.66 0.872241
Target:  5'- gGCCACgGCCuCGCAgaugcuauuaACUGGAAcCGUUAc -3'
miRNA:   3'- aCGGUG-CGG-GCGU----------UGAUCUUuGCGGU- -5'
32078 3' -55.4 NC_007016.1 + 115794 0.75 0.399554
Target:  5'- cGCCACcauguGCCCGCAAUUuGggGCGCgGg -3'
miRNA:   3'- aCGGUG-----CGGGCGUUGAuCuuUGCGgU- -5'
32078 3' -55.4 NC_007016.1 + 22569 0.71 0.635781
Target:  5'- gUGCCGaccccgGCCCGCAaaacACgcGGAACGCCc -3'
miRNA:   3'- -ACGGUg-----CGGGCGU----UGauCUUUGCGGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.