miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32082 5' -63.3 NC_007016.1 + 79611 0.66 0.5835
Target:  5'- cGCCCugugucuGUCGGUucaGUCGCCGaaucCCGCCc -3'
miRNA:   3'- -CGGGu------UAGCCG---CGGCGGCca--GGCGGu -5'
32082 5' -63.3 NC_007016.1 + 30209 0.66 0.5835
Target:  5'- uGCCCucUCGGCGCgGC---UCUGCCu -3'
miRNA:   3'- -CGGGuuAGCCGCGgCGgccAGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 26344 0.66 0.5835
Target:  5'- cGCCCAggaAUCGGCaaugucaaaCGCCGuuccuUCCGCCu -3'
miRNA:   3'- -CGGGU---UAGCCGcg-------GCGGCc----AGGCGGu -5'
32082 5' -63.3 NC_007016.1 + 115500 0.66 0.573797
Target:  5'- uCCC-AUUGGC-CCGCCGaG-CCGUCAa -3'
miRNA:   3'- cGGGuUAGCCGcGGCGGC-CaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 68363 0.66 0.572829
Target:  5'- gGCCguuucggCAAagGGCGagaGCCGG-CCGCCAu -3'
miRNA:   3'- -CGG-------GUUagCCGCgg-CGGCCaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 130208 0.66 0.564132
Target:  5'- gGCCCGGcgcgCGGCGCggggcgGCCGGgggcggCgGCCGc -3'
miRNA:   3'- -CGGGUUa---GCCGCGg-----CGGCCa-----GgCGGU- -5'
32082 5' -63.3 NC_007016.1 + 117679 0.66 0.544938
Target:  5'- gGCCCGAU-GGCGuCCGuuGGUaaaaCUGCUu -3'
miRNA:   3'- -CGGGUUAgCCGC-GGCggCCA----GGCGGu -5'
32082 5' -63.3 NC_007016.1 + 71830 0.66 0.53922
Target:  5'- aGCCCugaCGGCGUgcuuauaucugugucUGCCGGUgugCGCCAc -3'
miRNA:   3'- -CGGGuuaGCCGCG---------------GCGGCCAg--GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 19639 0.66 0.52596
Target:  5'- cGCUCAcaAUCgcgGGCgGCgGCCGGUUaaCGCCAg -3'
miRNA:   3'- -CGGGU--UAG---CCG-CGgCGGCCAG--GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 130181 0.67 0.516564
Target:  5'- aGCCCGG-CGGCGCCGCgccccgaCGCCc -3'
miRNA:   3'- -CGGGUUaGCCGCGGCGgccag--GCGGu -5'
32082 5' -63.3 NC_007016.1 + 19371 0.67 0.516564
Target:  5'- cGCCCGGaaacgCgGGCGCCGCggccauCGGcUCCGCg- -3'
miRNA:   3'- -CGGGUUa----G-CCGCGGCG------GCC-AGGCGgu -5'
32082 5' -63.3 NC_007016.1 + 109958 0.67 0.488802
Target:  5'- cGCCCAccCGGa--CGCCGGUCCGg-- -3'
miRNA:   3'- -CGGGUuaGCCgcgGCGGCCAGGCggu -5'
32082 5' -63.3 NC_007016.1 + 26868 0.67 0.479702
Target:  5'- cGUCCcGUCGuacGCGCCGCCcGUagCGCCAc -3'
miRNA:   3'- -CGGGuUAGC---CGCGGCGGcCAg-GCGGU- -5'
32082 5' -63.3 NC_007016.1 + 114360 0.67 0.479702
Target:  5'- uGCCCAccCGGaGCCacCCGGagCCGCCAc -3'
miRNA:   3'- -CGGGUuaGCCgCGGc-GGCCa-GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 18871 0.67 0.470687
Target:  5'- cGCgCGAUCGGUggccgagaagcuGCCgcaguuuuGCCGGgCCGCCGa -3'
miRNA:   3'- -CGgGUUAGCCG------------CGG--------CGGCCaGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 115984 0.68 0.444175
Target:  5'- uGCCCAcggggCGGUuuuuGCCGcCCGGggUCGCCGg -3'
miRNA:   3'- -CGGGUua---GCCG----CGGC-GGCCa-GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 130121 0.68 0.435525
Target:  5'- cGCCCccgGGUCccGCuCCGCCGGgccCCGCCGa -3'
miRNA:   3'- -CGGG---UUAGc-CGcGGCGGCCa--GGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 124814 0.68 0.435525
Target:  5'- gGCCCcagucuGUCGGCGagggUGCCuGUUCGCCGc -3'
miRNA:   3'- -CGGGu-----UAGCCGCg---GCGGcCAGGCGGU- -5'
32082 5' -63.3 NC_007016.1 + 22655 0.68 0.435525
Target:  5'- cCCCugaacCGGCGCCGCCGcGUggCGCCc -3'
miRNA:   3'- cGGGuua--GCCGCGGCGGC-CAg-GCGGu -5'
32082 5' -63.3 NC_007016.1 + 116049 0.68 0.435525
Target:  5'- cGCCCg--CGGUGCCaucGCCGGgucacCCGCgGg -3'
miRNA:   3'- -CGGGuuaGCCGCGG---CGGCCa----GGCGgU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.