Results 1 - 20 of 68 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32083 | 3' | -47.7 | NC_007016.1 | + | 106879 | 0.66 | 0.998769 |
Target: 5'- -cAAUAAGAgCaauauACGCGCCCggUGGu -3' miRNA: 3'- auUUGUUUUgGgu---UGCGCGGGuaACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 19981 | 0.66 | 0.998996 |
Target: 5'- gAAGCAGcaggGGCCCAACGUGgUUGUUGu -3' miRNA: 3'- aUUUGUU----UUGGGUUGCGCgGGUAACc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 107416 | 0.66 | 0.998769 |
Target: 5'- aAAACGggcAAAUCCAGCGCGUgCugUGGc -3' miRNA: 3'- aUUUGU---UUUGGGUUGCGCGgGuaACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 14177 | 0.66 | 0.998769 |
Target: 5'- --uACAcGACCagggaaGGCGCGCCCAa--- -3' miRNA: 3'- auuUGUuUUGGg-----UUGCGCGGGUaacc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 122413 | 0.66 | 0.998769 |
Target: 5'- --uACAGAGCauguaCAGCGCguuuguGCCCGUUGu -3' miRNA: 3'- auuUGUUUUGg----GUUGCG------CGGGUAACc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 20106 | 0.66 | 0.998996 |
Target: 5'- uUAAACGGGACCC--CGagGCCCAUgucGGc -3' miRNA: 3'- -AUUUGUUUUGGGuuGCg-CGGGUAa--CC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 28320 | 0.66 | 0.998975 |
Target: 5'- cGAACAAccuGACCCAgggcucguggucgGCGUGCCCc---- -3' miRNA: 3'- aUUUGUU---UUGGGU-------------UGCGCGGGuaacc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 56929 | 0.66 | 0.998769 |
Target: 5'- gUGggUAAGauACCCGccaGCGCCCcaAUUGGu -3' miRNA: 3'- -AUuuGUUU--UGGGUug-CGCGGG--UAACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 156 | 0.66 | 0.999186 |
Target: 5'- ---cCGGGGCCCucgguCGCGCCCcg-GG -3' miRNA: 3'- auuuGUUUUGGGuu---GCGCGGGuaaCC -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 27056 | 0.66 | 0.999475 |
Target: 5'- --cGCGAcACCCAAaccaugaGCGCCCucccGGa -3' miRNA: 3'- auuUGUUuUGGGUUg------CGCGGGuaa-CC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 40507 | 0.66 | 0.999186 |
Target: 5'- aAAAuCGAcGCCCAugccgcagACGUGgCCGUUGGc -3' miRNA: 3'- aUUU-GUUuUGGGU--------UGCGCgGGUAACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 52400 | 0.67 | 0.997377 |
Target: 5'- aAAACGc--CCUAACGCGCUCAUg-- -3' miRNA: 3'- aUUUGUuuuGGGUUGCGCGGGUAacc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 94385 | 0.67 | 0.99781 |
Target: 5'- ----gAGAACCCAugGCucuucGCCCAUUu- -3' miRNA: 3'- auuugUUUUGGGUugCG-----CGGGUAAcc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 36122 | 0.67 | 0.99781 |
Target: 5'- gGAGCccuGAACCgAGC-CGCCCGccUUGGc -3' miRNA: 3'- aUUUGu--UUUGGgUUGcGCGGGU--AACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 127240 | 0.67 | 0.99781 |
Target: 5'- --cACAAGACacuaCAGCGgGCCCGUccacGGu -3' miRNA: 3'- auuUGUUUUGg---GUUGCgCGGGUAa---CC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 122666 | 0.67 | 0.9985 |
Target: 5'- gGAACAgGGACUgGAaggccaGCGCCCAcgGGg -3' miRNA: 3'- aUUUGU-UUUGGgUUg-----CGCGGGUaaCC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 6303 | 0.67 | 0.998182 |
Target: 5'- -cAGCGAAGCCUuuaagGGCGUGCCCu---- -3' miRNA: 3'- auUUGUUUUGGG-----UUGCGCGGGuaacc -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 22871 | 0.67 | 0.99781 |
Target: 5'- -uGGCGGA--CCGGCgGCGCCgAUUGGg -3' miRNA: 3'- auUUGUUUugGGUUG-CGCGGgUAACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 28974 | 0.67 | 0.997233 |
Target: 5'- cUAGACA--GCCCAgcgccgauaggccgGCGCGaagguUCCAUUGGu -3' miRNA: 3'- -AUUUGUuuUGGGU--------------UGCGC-----GGGUAACC- -5' |
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32083 | 3' | -47.7 | NC_007016.1 | + | 90009 | 0.67 | 0.996874 |
Target: 5'- cGAGCGAcGCCUccgacguguACGUGCCCA-UGGc -3' miRNA: 3'- aUUUGUUuUGGGu--------UGCGCGGGUaACC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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