miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32083 3' -47.7 NC_007016.1 + 23174 1.09 0.014342
Target:  5'- gUAAACAAAACCCAACGCGCCCAUUGGc -3'
miRNA:   3'- -AUUUGUUUUGGGUUGCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 117667 0.82 0.528875
Target:  5'- uUAAACAAGgcggGCCCgAugGCGUCCGUUGGu -3'
miRNA:   3'- -AUUUGUUU----UGGG-UugCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 22974 0.78 0.724818
Target:  5'- cAGAUAAuaugaaaCCGGCGCGUCCAUUGGa -3'
miRNA:   3'- aUUUGUUuug----GGUUGCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 78912 0.76 0.805951
Target:  5'- cUAGGCuguGCCaggccaaGGCGCGCCUAUUGGg -3'
miRNA:   3'- -AUUUGuuuUGGg------UUGCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 115146 0.76 0.824629
Target:  5'- gUAAACAAAACCCAACuCGCggAUUGGc -3'
miRNA:   3'- -AUUUGUUUUGGGUUGcGCGggUAACC- -5'
32083 3' -47.7 NC_007016.1 + 125228 0.76 0.824629
Target:  5'- --cACGGAGCCgGAacCGgGCCCGUUGGa -3'
miRNA:   3'- auuUGUUUUGGgUU--GCgCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 112195 0.74 0.904506
Target:  5'- ---cCGGAACCCAaagacACGUGCCCG-UGGu -3'
miRNA:   3'- auuuGUUUUGGGU-----UGCGCGGGUaACC- -5'
32083 3' -47.7 NC_007016.1 + 114527 0.73 0.923425
Target:  5'- --cGCAAuACCCAgguacaGCGCGCagguaCAUUGGg -3'
miRNA:   3'- auuUGUUuUGGGU------UGCGCGg----GUAACC- -5'
32083 3' -47.7 NC_007016.1 + 107743 0.73 0.929179
Target:  5'- gGGGCAGAAauuaaCguGCGCGCCCAUUccGGg -3'
miRNA:   3'- aUUUGUUUUg----GguUGCGCGGGUAA--CC- -5'
32083 3' -47.7 NC_007016.1 + 122771 0.73 0.929179
Target:  5'- -cAGCGAGGCCagGugGCGCCCGUccGGu -3'
miRNA:   3'- auUUGUUUUGGg-UugCGCGGGUAa-CC- -5'
32083 3' -47.7 NC_007016.1 + 41767 0.72 0.949437
Target:  5'- -cGAgGGAGCCCugcuGCGaCGCCCAU-GGg -3'
miRNA:   3'- auUUgUUUUGGGu---UGC-GCGGGUAaCC- -5'
32083 3' -47.7 NC_007016.1 + 89862 0.72 0.949437
Target:  5'- gAAGCAgcccguguAAGCCCAcCGCGCCCca-GGa -3'
miRNA:   3'- aUUUGU--------UUUGGGUuGCGCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 116015 0.72 0.953396
Target:  5'- --cACGAAaagauguGCCCAugGUGCCguUUGGu -3'
miRNA:   3'- auuUGUUU-------UGGGUugCGCGGguAACC- -5'
32083 3' -47.7 NC_007016.1 + 49561 0.71 0.965066
Target:  5'- -cGACAAAACCgAACGaaugGCCCAcccauguUUGGg -3'
miRNA:   3'- auUUGUUUUGGgUUGCg---CGGGU-------AACC- -5'
32083 3' -47.7 NC_007016.1 + 107897 0.71 0.965416
Target:  5'- aUGGACAGGAUaaggAACGCGCCCAUgacaGGc -3'
miRNA:   3'- -AUUUGUUUUGgg--UUGCGCGGGUAa---CC- -5'
32083 3' -47.7 NC_007016.1 + 62208 0.71 0.967795
Target:  5'- aAGACGAAcacaggucaaucacAUCCGugGCGCCCGUg-- -3'
miRNA:   3'- aUUUGUUU--------------UGGGUugCGCGGGUAacc -5'
32083 3' -47.7 NC_007016.1 + 100962 0.71 0.974514
Target:  5'- aAAugAGAACCCGGucCGCGCCauguccauaccgaUAUUGGa -3'
miRNA:   3'- aUUugUUUUGGGUU--GCGCGG-------------GUAACC- -5'
32083 3' -47.7 NC_007016.1 + 92555 0.7 0.979201
Target:  5'- cAAACGGAGCCCG-CGCaccgGCCCGcuccaacuguuugaUUGGa -3'
miRNA:   3'- aUUUGUUUUGGGUuGCG----CGGGU--------------AACC- -5'
32083 3' -47.7 NC_007016.1 + 42790 0.7 0.979916
Target:  5'- cUGAGCuuGACCCAACgGgGUCCAUguccaGGg -3'
miRNA:   3'- -AUUUGuuUUGGGUUG-CgCGGGUAa----CC- -5'
32083 3' -47.7 NC_007016.1 + 22554 0.7 0.979916
Target:  5'- --cACGGucGCCCGGCGCGCgCG-UGGa -3'
miRNA:   3'- auuUGUUu-UGGGUUGCGCGgGUaACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.