miRNA display CGI


Results 1 - 20 of 68 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32083 3' -47.7 NC_007016.1 + 156 0.66 0.999186
Target:  5'- ---cCGGGGCCCucgguCGCGCCCcg-GG -3'
miRNA:   3'- auuuGUUUUGGGuu---GCGCGGGuaaCC -5'
32083 3' -47.7 NC_007016.1 + 6303 0.67 0.998182
Target:  5'- -cAGCGAAGCCUuuaagGGCGUGCCCu---- -3'
miRNA:   3'- auUUGUUUUGGG-----UUGCGCGGGuaacc -5'
32083 3' -47.7 NC_007016.1 + 13257 0.67 0.998182
Target:  5'- --cACAAAuGCaCCGAUGCGCCCGc--- -3'
miRNA:   3'- auuUGUUU-UG-GGUUGCGCGGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 14177 0.66 0.998769
Target:  5'- --uACAcGACCagggaaGGCGCGCCCAa--- -3'
miRNA:   3'- auuUGUuUUGGg-----UUGCGCGGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 16010 0.68 0.992711
Target:  5'- -cGAUAGAAUCCccuacguguucgugGACGCGCCCg--GGg -3'
miRNA:   3'- auUUGUUUUGGG--------------UUGCGCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 16821 0.67 0.9985
Target:  5'- gAGGCAGAACCgGACcgugugcCGCCCGUUc- -3'
miRNA:   3'- aUUUGUUUUGGgUUGc------GCGGGUAAcc -5'
32083 3' -47.7 NC_007016.1 + 19981 0.66 0.998996
Target:  5'- gAAGCAGcaggGGCCCAACGUGgUUGUUGu -3'
miRNA:   3'- aUUUGUU----UUGGGUUGCGCgGGUAACc -5'
32083 3' -47.7 NC_007016.1 + 20106 0.66 0.998996
Target:  5'- uUAAACGGGACCC--CGagGCCCAUgucGGc -3'
miRNA:   3'- -AUUUGUUUUGGGuuGCg-CGGGUAa--CC- -5'
32083 3' -47.7 NC_007016.1 + 20437 0.7 0.982166
Target:  5'- --cGCGGGACCCGuGCGCGuCCCAa--- -3'
miRNA:   3'- auuUGUUUUGGGU-UGCGC-GGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 21568 0.7 0.979916
Target:  5'- aGGGCAgaaGAACCCGGCGCaGCCUGcUUGa -3'
miRNA:   3'- aUUUGU---UUUGGGUUGCG-CGGGU-AACc -5'
32083 3' -47.7 NC_007016.1 + 22165 0.68 0.993027
Target:  5'- --cGCGGGGCCCAaagggccccGCGCGUCUGggGGc -3'
miRNA:   3'- auuUGUUUUGGGU---------UGCGCGGGUaaCC- -5'
32083 3' -47.7 NC_007016.1 + 22339 0.67 0.99781
Target:  5'- gAGACAAcgcGCCCccaGACGCgcgggGCCCuUUGGg -3'
miRNA:   3'- aUUUGUUu--UGGG---UUGCG-----CGGGuAACC- -5'
32083 3' -47.7 NC_007016.1 + 22554 0.7 0.979916
Target:  5'- --cACGGucGCCCGGCGCGCgCG-UGGa -3'
miRNA:   3'- auuUGUUu-UGGGUUGCGCGgGUaACC- -5'
32083 3' -47.7 NC_007016.1 + 22871 0.67 0.99781
Target:  5'- -uGGCGGA--CCGGCgGCGCCgAUUGGg -3'
miRNA:   3'- auUUGUUUugGGUUG-CGCGGgUAACC- -5'
32083 3' -47.7 NC_007016.1 + 22974 0.78 0.724818
Target:  5'- cAGAUAAuaugaaaCCGGCGCGUCCAUUGGa -3'
miRNA:   3'- aUUUGUUuug----GGUUGCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 23174 1.09 0.014342
Target:  5'- gUAAACAAAACCCAACGCGCCCAUUGGc -3'
miRNA:   3'- -AUUUGUUUUGGGUUGCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 27056 0.66 0.999475
Target:  5'- --cGCGAcACCCAAaccaugaGCGCCCucccGGa -3'
miRNA:   3'- auuUGUUuUGGGUUg------CGCGGGuaa-CC- -5'
32083 3' -47.7 NC_007016.1 + 28320 0.66 0.998975
Target:  5'- cGAACAAccuGACCCAgggcucguggucgGCGUGCCCc---- -3'
miRNA:   3'- aUUUGUU---UUGGGU-------------UGCGCGGGuaacc -5'
32083 3' -47.7 NC_007016.1 + 28897 0.69 0.991927
Target:  5'- gGAGCGAGGCCagguuGAgGCGCCgGUgGGg -3'
miRNA:   3'- aUUUGUUUUGGg----UUgCGCGGgUAaCC- -5'
32083 3' -47.7 NC_007016.1 + 28974 0.67 0.997233
Target:  5'- cUAGACA--GCCCAgcgccgauaggccgGCGCGaagguUCCAUUGGu -3'
miRNA:   3'- -AUUUGUuuUGGGU--------------UGCGC-----GGGUAACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.