miRNA display CGI


Results 1 - 20 of 68 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32083 3' -47.7 NC_007016.1 + 38898 0.68 0.996294
Target:  5'- gUGGACcgu-CCCAACGCGCagcccaCGUUGa -3'
miRNA:   3'- -AUUUGuuuuGGGUUGCGCGg-----GUAACc -5'
32083 3' -47.7 NC_007016.1 + 20437 0.7 0.982166
Target:  5'- --cGCGGGACCCGuGCGCGuCCCAa--- -3'
miRNA:   3'- auuUGUUUUGGGU-UGCGC-GGGUaacc -5'
32083 3' -47.7 NC_007016.1 + 62424 0.7 0.98609
Target:  5'- cAGGCGAAGCCCGugGCGaaaagCCAUc-- -3'
miRNA:   3'- aUUUGUUUUGGGUugCGCg----GGUAacc -5'
32083 3' -47.7 NC_007016.1 + 51195 0.69 0.989317
Target:  5'- -uAACGAuAUCguACGCGCCCGccGGg -3'
miRNA:   3'- auUUGUUuUGGguUGCGCGGGUaaCC- -5'
32083 3' -47.7 NC_007016.1 + 130342 0.69 0.990694
Target:  5'- gGGGCuGGGGCCCGGgGCGCCuCGgcgGGg -3'
miRNA:   3'- aUUUG-UUUUGGGUUgCGCGG-GUaa-CC- -5'
32083 3' -47.7 NC_007016.1 + 28897 0.69 0.991927
Target:  5'- gGAGCGAGGCCagguuGAgGCGCCgGUgGGg -3'
miRNA:   3'- aUUUGUUUUGGg----UUgCGCGGgUAaCC- -5'
32083 3' -47.7 NC_007016.1 + 16010 0.68 0.992711
Target:  5'- -cGAUAGAAUCCccuacguguucgugGACGCGCCCg--GGg -3'
miRNA:   3'- auUUGUUUUGGG--------------UUGCGCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 22165 0.68 0.993027
Target:  5'- --cGCGGGGCCCAaagggccccGCGCGUCUGggGGc -3'
miRNA:   3'- auuUGUUUUGGGU---------UGCGCGGGUaaCC- -5'
32083 3' -47.7 NC_007016.1 + 96949 0.68 0.994868
Target:  5'- cGAACAGAGCgau-CGCGCCCuaUGGc -3'
miRNA:   3'- aUUUGUUUUGgguuGCGCGGGuaACC- -5'
32083 3' -47.7 NC_007016.1 + 22554 0.7 0.979916
Target:  5'- --cACGGucGCCCGGCGCGCgCG-UGGa -3'
miRNA:   3'- auuUGUUu-UGGGUUGCGCGgGUaACC- -5'
32083 3' -47.7 NC_007016.1 + 92555 0.7 0.979201
Target:  5'- cAAACGGAGCCCG-CGCaccgGCCCGcuccaacuguuugaUUGGa -3'
miRNA:   3'- aUUUGUUUUGGGUuGCG----CGGGU--------------AACC- -5'
32083 3' -47.7 NC_007016.1 + 100962 0.71 0.974514
Target:  5'- aAAugAGAACCCGGucCGCGCCauguccauaccgaUAUUGGa -3'
miRNA:   3'- aUUugUUUUGGGUU--GCGCGG-------------GUAACC- -5'
32083 3' -47.7 NC_007016.1 + 22974 0.78 0.724818
Target:  5'- cAGAUAAuaugaaaCCGGCGCGUCCAUUGGa -3'
miRNA:   3'- aUUUGUUuug----GGUUGCGCGGGUAACC- -5'
32083 3' -47.7 NC_007016.1 + 115146 0.76 0.824629
Target:  5'- gUAAACAAAACCCAACuCGCggAUUGGc -3'
miRNA:   3'- -AUUUGUUUUGGGUUGcGCGggUAACC- -5'
32083 3' -47.7 NC_007016.1 + 114527 0.73 0.923425
Target:  5'- --cGCAAuACCCAgguacaGCGCGCagguaCAUUGGg -3'
miRNA:   3'- auuUGUUuUGGGU------UGCGCGg----GUAACC- -5'
32083 3' -47.7 NC_007016.1 + 107743 0.73 0.929179
Target:  5'- gGGGCAGAAauuaaCguGCGCGCCCAUUccGGg -3'
miRNA:   3'- aUUUGUUUUg----GguUGCGCGGGUAA--CC- -5'
32083 3' -47.7 NC_007016.1 + 122771 0.73 0.929179
Target:  5'- -cAGCGAGGCCagGugGCGCCCGUccGGu -3'
miRNA:   3'- auUUGUUUUGGg-UugCGCGGGUAa-CC- -5'
32083 3' -47.7 NC_007016.1 + 89862 0.72 0.949437
Target:  5'- gAAGCAgcccguguAAGCCCAcCGCGCCCca-GGa -3'
miRNA:   3'- aUUUGU--------UUUGGGUuGCGCGGGuaaCC- -5'
32083 3' -47.7 NC_007016.1 + 107897 0.71 0.965416
Target:  5'- aUGGACAGGAUaaggAACGCGCCCAUgacaGGc -3'
miRNA:   3'- -AUUUGUUUUGgg--UUGCGCGGGUAa---CC- -5'
32083 3' -47.7 NC_007016.1 + 62208 0.71 0.967795
Target:  5'- aAGACGAAcacaggucaaucacAUCCGugGCGCCCGUg-- -3'
miRNA:   3'- aUUUGUUU--------------UGGGUugCGCGGGUAacc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.