miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32087 3' -61.6 NC_007016.1 + 72495 0.66 0.653172
Target:  5'- uCGCGUCGacgGUCAGCCCCUuu--GCCGc -3'
miRNA:   3'- -GCGCGGUg--UAGUCGGGGGcuucCGGC- -5'
32087 3' -61.6 NC_007016.1 + 115437 0.66 0.633298
Target:  5'- gGUGCCACAgccgUCgAGCCCCgCGcccGGCuCGg -3'
miRNA:   3'- gCGCGGUGU----AG-UCGGGG-GCuu-CCG-GC- -5'
32087 3' -61.6 NC_007016.1 + 21579 0.66 0.623357
Target:  5'- aGgGCCAC---GGCCCCaGAAGGCgGc -3'
miRNA:   3'- gCgCGGUGuagUCGGGGgCUUCCGgC- -5'
32087 3' -61.6 NC_007016.1 + 17386 0.66 0.623356
Target:  5'- -aCGCCAgAUCG--CCCCGAGcGGCCGc -3'
miRNA:   3'- gcGCGGUgUAGUcgGGGGCUU-CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 118028 0.66 0.623356
Target:  5'- aGUGUCGCAgCAuCCCCCGucGGCgGu -3'
miRNA:   3'- gCGCGGUGUaGUcGGGGGCuuCCGgC- -5'
32087 3' -61.6 NC_007016.1 + 126638 0.66 0.613421
Target:  5'- uGgGCCGCcgCGGCCCUUagugcagacgaGGAGGCUu -3'
miRNA:   3'- gCgCGGUGuaGUCGGGGG-----------CUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 75372 0.66 0.603499
Target:  5'- aCGCGCaCGCAUC-GCCCCUu--GGCg- -3'
miRNA:   3'- -GCGCG-GUGUAGuCGGGGGcuuCCGgc -5'
32087 3' -61.6 NC_007016.1 + 130324 0.66 0.603499
Target:  5'- gGCGCCGCcgggcUCGGCCggaCCGggGcGCUc -3'
miRNA:   3'- gCGCGGUGu----AGUCGGg--GGCuuC-CGGc -5'
32087 3' -61.6 NC_007016.1 + 21332 0.67 0.593597
Target:  5'- aCGgGCCcaaccGCGUUGGCCCC-GggGGUCu -3'
miRNA:   3'- -GCgCGG-----UGUAGUCGGGGgCuuCCGGc -5'
32087 3' -61.6 NC_007016.1 + 117660 0.67 0.593596
Target:  5'- gGCGCCGCugcgCcGCCUCuggacaaauuggCGGAGGCCa -3'
miRNA:   3'- gCGCGGUGua--GuCGGGG------------GCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 72705 0.67 0.593596
Target:  5'- gCGUgGCCACGUCGGUgaaCCUGAuuuuGGCCc -3'
miRNA:   3'- -GCG-CGGUGUAGUCGg--GGGCUu---CCGGc -5'
32087 3' -61.6 NC_007016.1 + 125839 0.67 0.583721
Target:  5'- gGCGCUggaaaacgcaGCcgUAGCUCCUGcGGGCCa -3'
miRNA:   3'- gCGCGG----------UGuaGUCGGGGGCuUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 17734 0.67 0.583721
Target:  5'- uGCGUCACGgagCGGUCUCCGugucuGCCGg -3'
miRNA:   3'- gCGCGGUGUa--GUCGGGGGCuuc--CGGC- -5'
32087 3' -61.6 NC_007016.1 + 119225 0.67 0.573878
Target:  5'- --aGCCACA-CAGaccaCCCCGccGGGCCGu -3'
miRNA:   3'- gcgCGGUGUaGUCg---GGGGCu-UCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 27680 0.67 0.573878
Target:  5'- aGCGCC-----GGCCUUCGggGGCUGa -3'
miRNA:   3'- gCGCGGuguagUCGGGGGCuuCCGGC- -5'
32087 3' -61.6 NC_007016.1 + 13894 0.67 0.561142
Target:  5'- uCGagaaGCCGCAcgCGGCCCUgccggcgguguucuUGAGGGCCu -3'
miRNA:   3'- -GCg---CGGUGUa-GUCGGGG--------------GCUUCCGGc -5'
32087 3' -61.6 NC_007016.1 + 22946 0.67 0.554316
Target:  5'- gGUGCuCGCGUCucuGGCCCgCCGccagguGGCCGc -3'
miRNA:   3'- gCGCG-GUGUAG---UCGGG-GGCuu----CCGGC- -5'
32087 3' -61.6 NC_007016.1 + 108084 0.68 0.534955
Target:  5'- aCGCGCCAaggcCGUCGGagugCCCCGuAAGGgCa -3'
miRNA:   3'- -GCGCGGU----GUAGUCg---GGGGC-UUCCgGc -5'
32087 3' -61.6 NC_007016.1 + 123407 0.68 0.534955
Target:  5'- uGCGgC-CAUCAGCgCCCUGggGaGCgGg -3'
miRNA:   3'- gCGCgGuGUAGUCG-GGGGCuuC-CGgC- -5'
32087 3' -61.6 NC_007016.1 + 120655 0.68 0.525364
Target:  5'- aGCgGgCACGgugguUCAGCCCCCGuucGCCGg -3'
miRNA:   3'- gCG-CgGUGU-----AGUCGGGGGCuucCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.