Results 21 - 40 of 47 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 63342 | 0.66 | 0.696571 |
Target: 5'- aAUUGUUaaACCGCCGagACCGCuguuCAUUGCg -3' miRNA: 3'- -UAACAG--UGGCGGCggUGGCG----GUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 62764 | 0.68 | 0.5676 |
Target: 5'- uUUGUCAUCGCCGgCGCUG--AUCGCg -3' miRNA: 3'- uAACAGUGGCGGCgGUGGCggUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 62262 | 0.69 | 0.490819 |
Target: 5'- -cUGUCGuuaaUGCCGUCGCCGCCGCa-- -3' miRNA: 3'- uaACAGUg---GCGGCGGUGGCGGUGgcg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 60219 | 0.68 | 0.557796 |
Target: 5'- --cGUCACCGCUuucguugaGCCACacaugGCCAUCGa -3' miRNA: 3'- uaaCAGUGGCGG--------CGGUGg----CGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 54900 | 0.71 | 0.419209 |
Target: 5'- --cGaCACCGCCGCCGCCGCaaacuuuuaUAUCGa -3' miRNA: 3'- uaaCaGUGGCGGCGGUGGCG---------GUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 51478 | 0.66 | 0.666949 |
Target: 5'- --cGUCACUGUCGUUAUCGUCAUCu- -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGUGGcg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 49122 | 0.67 | 0.617146 |
Target: 5'- aAUUG--GCCGUCGUCAUCGaCCAUCGUg -3' miRNA: 3'- -UAACagUGGCGGCGGUGGC-GGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 44261 | 0.73 | 0.324622 |
Target: 5'- cUUGUCGUCGUCGUCGCCGCCcUCGUc -3' miRNA: 3'- uAACAGUGGCGGCGGUGGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 41177 | 0.68 | 0.587332 |
Target: 5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3' miRNA: 3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 39770 | 0.69 | 0.519118 |
Target: 5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3' miRNA: 3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 38544 | 0.7 | 0.466885 |
Target: 5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3' miRNA: 3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 37187 | 0.72 | 0.34671 |
Target: 5'- -aUGUCAUCGacgacaucuUUGUCGCCGCCACCGg -3' miRNA: 3'- uaACAGUGGC---------GGCGGUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 36135 | 0.76 | 0.199184 |
Target: 5'- cGUUGcCAUCGUcauCGCCGCCGCUGCCGUu -3' miRNA: 3'- -UAACaGUGGCG---GCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 26690 | 1.08 | 0.001219 |
Target: 5'- cAUUGUCACCGCCGCCACCGCCACCGCc -3' miRNA: 3'- -UAACAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 24124 | 0.74 | 0.258657 |
Target: 5'- ---aUCACCGCCGgaGCCGCCAUCGa -3' miRNA: 3'- uaacAGUGGCGGCggUGGCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 19677 | 0.67 | 0.657011 |
Target: 5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3' miRNA: 3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 19465 | 0.67 | 0.617146 |
Target: 5'- ---cUCugCGCCuuGUCGCguaGCCGCCGCu -3' miRNA: 3'- uaacAGugGCGG--CGGUGg--CGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 17367 | 0.69 | 0.50961 |
Target: 5'- -cUGUCGcuuCCGuuGCUAUCGUCACUGUc -3' miRNA: 3'- uaACAGU---GGCggCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 17153 | 0.66 | 0.725731 |
Target: 5'- -cUGUCGUCGUCGUCGUCGUCAUCGUc -3' miRNA: 3'- uaACAGUGGCGGCGGUGGCGGUGGCG- -5' |
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32567 | 5' | -60.6 | NC_007151.1 | + | 16395 | 0.68 | 0.548039 |
Target: 5'- ----cCAUCGCCGUCAgUGUCAUCGCu -3' miRNA: 3'- uaacaGUGGCGGCGGUgGCGGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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