miRNA display CGI


Results 21 - 40 of 47 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32567 5' -60.6 NC_007151.1 + 127171 0.84 0.055519
Target:  5'- --cGUCACCGUCGUCgacauaauccacaACCGCCACCGCa -3'
miRNA:   3'- uaaCAGUGGCGGCGG-------------UGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 1413 0.86 0.042735
Target:  5'- ----cCACCGCCaccGCCACCGCCACCGCc -3'
miRNA:   3'- uaacaGUGGCGG---CGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 3854 0.69 0.513404
Target:  5'- -aUGUCAgCuCCGCCACCGaugaugaugccagcaCCACCGa -3'
miRNA:   3'- uaACAGUgGcGGCGGUGGC---------------GGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 64517 0.72 0.377799
Target:  5'- --aGUaCGCUGCCGUCGCCGgCGCCa- -3'
miRNA:   3'- uaaCA-GUGGCGGCGGUGGCgGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 37187 0.72 0.34671
Target:  5'- -aUGUCAUCGacgacaucuUUGUCGCCGCCACCGg -3'
miRNA:   3'- uaACAGUGGC---------GGCGGUGGCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 44261 0.73 0.324622
Target:  5'- cUUGUCGUCGUCGUCGCCGCCcUCGUc -3'
miRNA:   3'- uAACAGUGGCGGCGGUGGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 126870 0.73 0.310488
Target:  5'- -cUGUUGCUGUugcgaUGCCGCCGCCuCCGCc -3'
miRNA:   3'- uaACAGUGGCG-----GCGGUGGCGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 91803 0.75 0.224592
Target:  5'- uAUUGUcCGCCGCugagCGCCGCCuGCCuCCGCu -3'
miRNA:   3'- -UAACA-GUGGCG----GCGGUGG-CGGuGGCG- -5'
32567 5' -60.6 NC_007151.1 + 76888 0.71 0.402315
Target:  5'- ---uUCGCCGCUGCUGUCGUCAUCGCu -3'
miRNA:   3'- uaacAGUGGCGGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 54900 0.71 0.419209
Target:  5'- --cGaCACCGCCGCCGCCGCaaacuuuuaUAUCGa -3'
miRNA:   3'- uaaCaGUGGCGGCGGUGGCG---------GUGGCg -5'
32567 5' -60.6 NC_007151.1 + 125770 0.7 0.436527
Target:  5'- uGUUGUCGCUGCCGuUUGCCGCCcauuaaauggauGCUGUc -3'
miRNA:   3'- -UAACAGUGGCGGC-GGUGGCGG------------UGGCG- -5'
32567 5' -60.6 NC_007151.1 + 3036 0.67 0.647054
Target:  5'- --cGUCAUCGCUGUCAUUGgCCGaaGCa -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGC-GGUggCG- -5'
32567 5' -60.6 NC_007151.1 + 19677 0.67 0.657011
Target:  5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3'
miRNA:   3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5'
32567 5' -60.6 NC_007151.1 + 79509 0.66 0.696571
Target:  5'- --cGUCcuCCuCCGCCACCaCCACCa- -3'
miRNA:   3'- uaaCAGu-GGcGGCGGUGGcGGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 117662 0.66 0.716077
Target:  5'- cAUUGgccggUAgaGCCGaaACCGCCGCUGCc -3'
miRNA:   3'- -UAACa----GUggCGGCggUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 93949 0.66 0.725731
Target:  5'- --aGUUGCuCGagauCGCCAUCGCCaagACCGCc -3'
miRNA:   3'- uaaCAGUG-GCg---GCGGUGGCGG---UGGCG- -5'
32567 5' -60.6 NC_007151.1 + 142068 0.69 0.537371
Target:  5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3'
miRNA:   3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5'
32567 5' -60.6 NC_007151.1 + 51478 0.66 0.666949
Target:  5'- --cGUCACUGUCGUUAUCGUCAUCu- -3'
miRNA:   3'- uaaCAGUGGCGGCGGUGGCGGUGGcg -5'
32567 5' -60.6 NC_007151.1 + 39770 0.69 0.519118
Target:  5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3'
miRNA:   3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5'
32567 5' -60.6 NC_007151.1 + 38544 0.7 0.466885
Target:  5'- uUUGUCGCCGauGCCuguguaaaagaagcCCGCCuCCGCu -3'
miRNA:   3'- uAACAGUGGCggCGGu-------------GGCGGuGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.