Results 41 - 47 of 47 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
|
Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 32567 | 5' | -60.6 | NC_007151.1 | + | 19677 | 0.67 | 0.657011 |
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Target: 5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3' miRNA: 3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 127169 | 0.68 | 0.597248 |
|
Target: 5'- --cGUCGCCaGcCCGUgAUCGCCAUCGa -3' miRNA: 3'- uaaCAGUGG-C-GGCGgUGGCGGUGGCg -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 41177 | 0.68 | 0.587332 |
|
Target: 5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3' miRNA: 3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 16395 | 0.68 | 0.548039 |
|
Target: 5'- ----cCAUCGCCGUCAgUGUCAUCGCu -3' miRNA: 3'- uaacaGUGGCGGCGGUgGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 142068 | 0.69 | 0.537371 |
|
Target: 5'- -cUGUCGCCGCCGCUgucaaagAUUGCCGauCUGUc -3' miRNA: 3'- uaACAGUGGCGGCGG-------UGGCGGU--GGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 39770 | 0.69 | 0.519118 |
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Target: 5'- aAUUGUCuuCGacacuagaaUCGCUACCGCCGCUGUc -3' miRNA: 3'- -UAACAGugGC---------GGCGGUGGCGGUGGCG- -5' |
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| 32567 | 5' | -60.6 | NC_007151.1 | + | 92813 | 0.79 | 0.134075 |
|
Target: 5'- --aGUguCCGCCGCgaucgaucUACCGCCGCCGCu -3' miRNA: 3'- uaaCAguGGCGGCG--------GUGGCGGUGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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