Results 41 - 47 of 47 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 41177 | 0.68 | 0.587332 |
Target: 5'- --cGagACCGCCGUCGuuagcgaCGCCGCCGg -3' miRNA: 3'- uaaCagUGGCGGCGGUg------GCGGUGGCg -5' |
|||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 127169 | 0.68 | 0.597248 |
Target: 5'- --cGUCGCCaGcCCGUgAUCGCCAUCGa -3' miRNA: 3'- uaaCAGUGG-C-GGCGgUGGCGGUGGCg -5' |
|||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 3036 | 0.67 | 0.647054 |
Target: 5'- --cGUCAUCGCUGUCAUUGgCCGaaGCa -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGC-GGUggCG- -5' |
|||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 19677 | 0.67 | 0.657011 |
Target: 5'- --aGUCgACCGUCGCCAgaGUUGCCGa -3' miRNA: 3'- uaaCAG-UGGCGGCGGUggCGGUGGCg -5' |
|||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 51478 | 0.66 | 0.666949 |
Target: 5'- --cGUCACUGUCGUUAUCGUCAUCu- -3' miRNA: 3'- uaaCAGUGGCGGCGGUGGCGGUGGcg -5' |
|||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 79509 | 0.66 | 0.696571 |
Target: 5'- --cGUCcuCCuCCGCCACCaCCACCa- -3' miRNA: 3'- uaaCAGu-GGcGGCGGUGGcGGUGGcg -5' |
|||||||
32567 | 5' | -60.6 | NC_007151.1 | + | 117662 | 0.66 | 0.716077 |
Target: 5'- cAUUGgccggUAgaGCCGaaACCGCCGCUGCc -3' miRNA: 3'- -UAACa----GUggCGGCggUGGCGGUGGCG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home