miRNA display CGI


Results 1 - 20 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 28892 0.66 0.999993
Target:  5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3'
miRNA:   3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 107666 0.66 0.999993
Target:  5'- cGGUCGUUuuaAUCGcgGcCGUUGUCGGCGa -3'
miRNA:   3'- -UCAGCAG---UAGCuuUaGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 134551 0.66 0.999993
Target:  5'- cGUUGUCAUCGAuAUUaauguauagauaGUUGUCGAUc -3'
miRNA:   3'- uCAGCAGUAGCUuUAG------------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 12038 0.66 0.999993
Target:  5'- uGUUGUgGUC--AGUCAUCAUCGGg- -3'
miRNA:   3'- uCAGCAgUAGcuUUAGUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 37877 0.66 0.99999
Target:  5'- cGUUcgGUCAcCGAAGUCAUCAgCGAa- -3'
miRNA:   3'- uCAG--CAGUaGCUUUAGUAGUaGCUgu -5'
32568 3' -45.7 NC_007151.1 + 140551 0.66 0.999986
Target:  5'- cGUCG-CcgCGGGAcgAUCGUCGGCGu -3'
miRNA:   3'- uCAGCaGuaGCUUUagUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 11731 0.66 0.999986
Target:  5'- uGUUGUCGUgGAAuacgauuggGUCGUCGaUGACAu -3'
miRNA:   3'- uCAGCAGUAgCUU---------UAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 132869 0.66 0.999986
Target:  5'- uGGcCG-CAUCGAuGUCGUCAaguccgaugccuUCGGCGa -3'
miRNA:   3'- -UCaGCaGUAGCUuUAGUAGU------------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 90006 0.66 0.999986
Target:  5'- uGUUGUCAaCGAuuUCGUCAU-GAUAa -3'
miRNA:   3'- uCAGCAGUaGCUuuAGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44504 0.66 0.999981
Target:  5'- -uUCGUCGUCG---UCGUCGcuuUCGACc -3'
miRNA:   3'- ucAGCAGUAGCuuuAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 74681 0.66 0.999981
Target:  5'- ----aUCAUCGAGAUUacgAUCGUCGAUg -3'
miRNA:   3'- ucagcAGUAGCUUUAG---UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 143082 0.66 0.999977
Target:  5'- gAGUCGUCGggaUCaacgacggacgauuuGGAcUCAUCAUCGAUu -3'
miRNA:   3'- -UCAGCAGU---AG---------------CUUuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 109464 0.67 0.999964
Target:  5'- uGUCGUCAgCGAcuauggCGUCGACGa -3'
miRNA:   3'- uCAGCAGUaGCUuuaguaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18538 0.67 0.999959
Target:  5'- cGUCGcCAUCGGuuUCGUCGaagagcacucgagCGACAc -3'
miRNA:   3'- uCAGCaGUAGCUuuAGUAGUa------------GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 123109 0.67 0.999951
Target:  5'- cGUCGUCGacguaaaucUCGAuGUCGaUGUCGGCGa -3'
miRNA:   3'- uCAGCAGU---------AGCUuUAGUaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37554 0.67 0.999951
Target:  5'- -aUCGUCAUCGuc-UCgaaaacuacuGUCGUCGACu -3'
miRNA:   3'- ucAGCAGUAGCuuuAG----------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 89877 0.67 0.999935
Target:  5'- --cCGUgAUCGAucagAAUCGUCGaCGACAa -3'
miRNA:   3'- ucaGCAgUAGCU----UUAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 78266 0.67 0.999935
Target:  5'- -uUCGg-AUUGAAcguuAUCGUCAUCGACGa -3'
miRNA:   3'- ucAGCagUAGCUU----UAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 101541 0.67 0.999923
Target:  5'- uGUCGUCAcCGAcaaugucgacaauaaAAUUGUCAaCGACAg -3'
miRNA:   3'- uCAGCAGUaGCU---------------UUAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37156 0.67 0.999906
Target:  5'- -uUUGUCGUCGAcgccaaaagacgaaAAUUuaauGUCAUCGACGa -3'
miRNA:   3'- ucAGCAGUAGCU--------------UUAG----UAGUAGCUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.