miRNA display CGI


Results 41 - 60 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 12038 0.66 0.999993
Target:  5'- uGUUGUgGUC--AGUCAUCAUCGGg- -3'
miRNA:   3'- uCAGCAgUAGcuUUAGUAGUAGCUgu -5'
32568 3' -45.7 NC_007151.1 + 107666 0.66 0.999993
Target:  5'- cGGUCGUUuuaAUCGcgGcCGUUGUCGGCGa -3'
miRNA:   3'- -UCAGCAG---UAGCuuUaGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 134551 0.66 0.999993
Target:  5'- cGUUGUCAUCGAuAUUaauguauagauaGUUGUCGAUc -3'
miRNA:   3'- uCAGCAGUAGCUuUAG------------UAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 48576 0.7 0.998538
Target:  5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3'
miRNA:   3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44266 0.7 0.998823
Target:  5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3'
miRNA:   3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5'
32568 3' -45.7 NC_007151.1 + 14728 0.7 0.99904
Target:  5'- --cCGUCAcCGAAAUCAUCAacagCGAUg -3'
miRNA:   3'- ucaGCAGUaGCUUUAGUAGUa---GCUGu -5'
32568 3' -45.7 NC_007151.1 + 1259 0.69 0.999222
Target:  5'- cGGUgGa-AUCGAAGUCAguggCAUCGGCGg -3'
miRNA:   3'- -UCAgCagUAGCUUUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 3033 0.69 0.999222
Target:  5'- cGUCGUCAUCGc---UGUCAUUGGCc -3'
miRNA:   3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 12907 0.69 0.999373
Target:  5'- uGUCGUCAUCG------UCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGCuuuaguAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 57950 0.69 0.999499
Target:  5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3'
miRNA:   3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 26064 0.71 0.99749
Target:  5'- --aCGUCAUCGAcAUCGUCga-GACAg -3'
miRNA:   3'- ucaGCAGUAGCUuUAGUAGuagCUGU- -5'
32568 3' -45.7 NC_007151.1 + 41313 0.71 0.997008
Target:  5'- uGUUGcucuUCAUCGA--UCAUCAUCGAUc -3'
miRNA:   3'- uCAGC----AGUAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 29715 0.71 0.995813
Target:  5'- cGUCGUCGUCGA---CGUCAUCucCAu -3'
miRNA:   3'- uCAGCAGUAGCUuuaGUAGUAGcuGU- -5'
32568 3' -45.7 NC_007151.1 + 85903 0.72 0.992257
Target:  5'- -aUCGUCAgCGAAAUCGUCAuuaUCGuCAu -3'
miRNA:   3'- ucAGCAGUaGCUUUAGUAGU---AGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 140343 0.73 0.989744
Target:  5'- -aUCGUCcgagaGUCGA--UCAUCGUCGACu -3'
miRNA:   3'- ucAGCAG-----UAGCUuuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 44504 0.66 0.999981
Target:  5'- -uUCGUCGUCG---UCGUCGcuuUCGACc -3'
miRNA:   3'- ucAGCAGUAGCuuuAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 90006 0.66 0.999986
Target:  5'- uGUUGUCAaCGAuuUCGUCAU-GAUAa -3'
miRNA:   3'- uCAGCAGUaGCUuuAGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 132869 0.66 0.999986
Target:  5'- uGGcCG-CAUCGAuGUCGUCAaguccgaugccuUCGGCGa -3'
miRNA:   3'- -UCaGCaGUAGCUuUAGUAGU------------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 11731 0.66 0.999986
Target:  5'- uGUUGUCGUgGAAuacgauuggGUCGUCGaUGACAu -3'
miRNA:   3'- uCAGCAGUAgCUU---------UAGUAGUaGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 37877 0.66 0.99999
Target:  5'- cGUUcgGUCAcCGAAGUCAUCAgCGAa- -3'
miRNA:   3'- uCAG--CAGUaGCUUUAGUAGUaGCUgu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.