miRNA display CGI


Results 21 - 40 of 71 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32568 3' -45.7 NC_007151.1 + 27569 1.1 0.026944
Target:  5'- aAGUCGUCAUCGAAAUCAUCAUCGACAu -3'
miRNA:   3'- -UCAGCAGUAGCUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 90471 0.73 0.988269
Target:  5'- cGGUCaacgcUCGUCGAcgcCAUCGUCGACAa -3'
miRNA:   3'- -UCAGc----AGUAGCUuuaGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 2052 0.78 0.900624
Target:  5'- uGcCGUCAUCGGAgacagaGUCGUCAUgGACAg -3'
miRNA:   3'- uCaGCAGUAGCUU------UAGUAGUAgCUGU- -5'
32568 3' -45.7 NC_007151.1 + 143082 0.66 0.999977
Target:  5'- gAGUCGUCGggaUCaacgacggacgauuuGGAcUCAUCAUCGAUu -3'
miRNA:   3'- -UCAGCAGU---AG---------------CUUuAGUAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 127183 0.87 0.483671
Target:  5'- cGUCGUCGUCGucGUCAccgUCGUCGACAu -3'
miRNA:   3'- uCAGCAGUAGCuuUAGU---AGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 140551 0.66 0.999986
Target:  5'- cGUCG-CcgCGGGAcgAUCGUCGGCGu -3'
miRNA:   3'- uCAGCaGuaGCUUUagUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 28892 0.66 0.999993
Target:  5'- -aUCGUCGauuggaacgaUgGAAAUCGUCAUggCGACGa -3'
miRNA:   3'- ucAGCAGU----------AgCUUUAGUAGUA--GCUGU- -5'
32568 3' -45.7 NC_007151.1 + 18292 0.73 0.988269
Target:  5'- uGUUGUUgggGUUcAGAUCGUCAUCGACAa -3'
miRNA:   3'- uCAGCAG---UAGcUUUAGUAGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 51474 0.76 0.9466
Target:  5'- gAGUCGUCAcugUCGuuAUCGUCAucuUCGAUg -3'
miRNA:   3'- -UCAGCAGU---AGCuuUAGUAGU---AGCUGu -5'
32568 3' -45.7 NC_007151.1 + 57950 0.69 0.999499
Target:  5'- uGUUGuUCAUCGucuUCGUCuUCGACGa -3'
miRNA:   3'- uCAGC-AGUAGCuuuAGUAGuAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 12907 0.69 0.999373
Target:  5'- uGUCGUCAUCG------UCGUCGACc -3'
miRNA:   3'- uCAGCAGUAGCuuuaguAGUAGCUGu -5'
32568 3' -45.7 NC_007151.1 + 105771 0.73 0.982847
Target:  5'- cGUCuGUCGUCGAuuuugcGUCGUCGUCGuCGu -3'
miRNA:   3'- uCAG-CAGUAGCUu-----UAGUAGUAGCuGU- -5'
32568 3' -45.7 NC_007151.1 + 80897 0.73 0.982847
Target:  5'- -uUCGcCAUCGAcGAUCggCAUCGACAu -3'
miRNA:   3'- ucAGCaGUAGCU-UUAGuaGUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 132261 0.74 0.980674
Target:  5'- cGUCGUgGUCGucGUCGUCGUCG-Cu -3'
miRNA:   3'- uCAGCAgUAGCuuUAGUAGUAGCuGu -5'
32568 3' -45.7 NC_007151.1 + 122902 0.74 0.978301
Target:  5'- uGUCGUCGUUGucGUCGUCAUCcAUAu -3'
miRNA:   3'- uCAGCAGUAGCuuUAGUAGUAGcUGU- -5'
32568 3' -45.7 NC_007151.1 + 48576 0.7 0.998538
Target:  5'- --aUGUUAUCGGAAUCGUCAcgaacgaUUGGCAu -3'
miRNA:   3'- ucaGCAGUAGCUUUAGUAGU-------AGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 44266 0.7 0.998823
Target:  5'- cGUCGUCGUCGccgcccUCGUCuUCGugGu -3'
miRNA:   3'- uCAGCAGUAGCuuu---AGUAGuAGCugU- -5'
32568 3' -45.7 NC_007151.1 + 14728 0.7 0.99904
Target:  5'- --cCGUCAcCGAAAUCAUCAacagCGAUg -3'
miRNA:   3'- ucaGCAGUaGCUUUAGUAGUa---GCUGu -5'
32568 3' -45.7 NC_007151.1 + 1259 0.69 0.999222
Target:  5'- cGGUgGa-AUCGAAGUCAguggCAUCGGCGg -3'
miRNA:   3'- -UCAgCagUAGCUUUAGUa---GUAGCUGU- -5'
32568 3' -45.7 NC_007151.1 + 3033 0.69 0.999222
Target:  5'- cGUCGUCAUCGc---UGUCAUUGGCc -3'
miRNA:   3'- uCAGCAGUAGCuuuaGUAGUAGCUGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.