miRNA display CGI


Results 41 - 60 of 99 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32575 5' -48.4 NC_007151.1 + 22229 0.69 0.992921
Target:  5'- uGGCGuCGAcacCGACGACGACucgGAGAaCGAa -3'
miRNA:   3'- -CUGCuGCU---GCUGCUGCUG---UUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 74026 0.81 0.627293
Target:  5'- aGAUGACGACGAaGACGACGAAGaUGAa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 36383 0.69 0.994478
Target:  5'- aGCGACGACGAUaACGACucuauugcuagacaAGAAUCa- -3'
miRNA:   3'- cUGCUGCUGCUGcUGCUG--------------UUUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 77202 0.7 0.989335
Target:  5'- --aGACGAaGACGACGACGAAGa--- -3'
miRNA:   3'- cugCUGCUgCUGCUGCUGUUUUagcu -5'
32575 5' -48.4 NC_007151.1 + 45880 0.72 0.969926
Target:  5'- cGCGACGGCucGCGAgUGGCAAAAUCGu -3'
miRNA:   3'- cUGCUGCUGc-UGCU-GCUGUUUUAGCu -5'
32575 5' -48.4 NC_007151.1 + 44431 0.89 0.267963
Target:  5'- gGGCGGCGACGACGACGACAaggcaaAAAUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGU------UUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 132434 0.82 0.553709
Target:  5'- aGCGACGACGACGACGACca---CGAc -3'
miRNA:   3'- cUGCUGCUGCUGCUGCUGuuuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 105954 1.1 0.017363
Target:  5'- aGACGACGACGACGACGACAAAAUCGAc -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 140541 0.8 0.648475
Target:  5'- gGACGAuCGuCGGCGugGAUGGAGUCGAc -3'
miRNA:   3'- -CUGCU-GCuGCUGCugCUGUUUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 4322 0.78 0.771685
Target:  5'- uGAUGAUGAUGAUGACGAUGAuGUUGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 142387 0.75 0.903814
Target:  5'- -gUGACGACGAUaGCGACAAGGaCGAg -3'
miRNA:   3'- cuGCUGCUGCUGcUGCUGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 51621 0.74 0.916281
Target:  5'- aACGACGACGAaaGCGAagauGAAUCGAu -3'
miRNA:   3'- cUGCUGCUGCUgcUGCUgu--UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 30609 0.72 0.963411
Target:  5'- uACGuCGGCGACGAUGAgAaugcggAAAUCGAc -3'
miRNA:   3'- cUGCuGCUGCUGCUGCUgU------UUUAGCU- -5'
32575 5' -48.4 NC_007151.1 + 13072 0.84 0.492756
Target:  5'- -uCGACGACGAUGACGACAAAGaaGAa -3'
miRNA:   3'- cuGCUGCUGCUGCUGCUGUUUUagCU- -5'
32575 5' -48.4 NC_007151.1 + 83406 0.69 0.995471
Target:  5'- aACGAcaaagcCGACGAUGGCGAUAuAAUCu- -3'
miRNA:   3'- cUGCU------GCUGCUGCUGCUGUuUUAGcu -5'
32575 5' -48.4 NC_007151.1 + 26519 0.69 0.996132
Target:  5'- uGGCGGUGGCGGCGGUGACAAugaCGAu -3'
miRNA:   3'- -CUGCUGCUGCUGCUGCUGUUuuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 41483 0.78 0.771685
Target:  5'- uGACGACGAUGAaGACGAUGAAggCGGa -3'
miRNA:   3'- -CUGCUGCUGCUgCUGCUGUUUuaGCU- -5'
32575 5' -48.4 NC_007151.1 + 77342 0.68 0.997217
Target:  5'- -cCGACGAUGGuCGACGaACGAGAcUGAu -3'
miRNA:   3'- cuGCUGCUGCU-GCUGC-UGUUUUaGCU- -5'
32575 5' -48.4 NC_007151.1 + 62090 0.72 0.959808
Target:  5'- cGGCGGCGACGGCauuaACGACAGucUCa- -3'
miRNA:   3'- -CUGCUGCUGCUGc---UGCUGUUuuAGcu -5'
32575 5' -48.4 NC_007151.1 + 104136 0.72 0.961277
Target:  5'- aGGCGACGAguCGACGACauagaagacauggaaGACAAAGaCGAu -3'
miRNA:   3'- -CUGCUGCU--GCUGCUG---------------CUGUUUUaGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.